Literature DB >> 22536462

FAST WAVELET-BASED SINGLE-PARTICLE RECONSTRUCTION IN CRYO-EM.

Cédric Vonesch1, Lanhui Wang, Yoel Shkolnisky, Amit Singer.   

Abstract

This paper presents a novel algorithm for the 3D tomographic inversion problem that arises in single-particle electron cryo-microscopy (Cryo-EM). It is based on two key components: 1) a variational formulation that promotes sparsity in the wavelet domain and 2) the Toeplitz structure of the combined projection/back-projection operator. The first idea has proven to be very effective for the recovery of piecewise-smooth signals, which is confirmed by our numerical experiments. The second idea allows for a computationally efficient implementation of the reconstruction procedure, using only one circulant convolution per iteration.

Entities:  

Year:  2011        PMID: 22536462      PMCID: PMC3334313          DOI: 10.1109/ISBI.2011.5872791

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  3 in total

Review 1.  Single-particle electron cryo-microscopy: towards atomic resolution.

Authors:  M van Heel; B Gowen; R Matadeen; E V Orlova; R Finn; T Pape; D Cohen; H Stark; R Schmidt; M Schatz; A Patwardhan
Journal:  Q Rev Biophys       Date:  2000-11       Impact factor: 5.318

2.  A fast multilevel algorithm for wavelet-regularized image restoration.

Authors:  Cédric Vonesch; Michael Unser
Journal:  IEEE Trans Image Process       Date:  2009-02-02       Impact factor: 10.856

Review 3.  Fundamentals of three-dimensional reconstruction from projections.

Authors:  Pawel A Penczek
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

  3 in total
  4 in total

1.  Orientation Determination of Cryo-EM Images Using Least Unsquared Deviations.

Authors:  Lanhui Wang; Amit Singer; Zaiwen Wen
Journal:  SIAM J Imaging Sci       Date:  2013-12-03       Impact factor: 2.867

2.  A Bayesian adaptive basis algorithm for single particle reconstruction.

Authors:  Alp Kucukelbir; Fred J Sigworth; Hemant D Tagare
Journal:  J Struct Biol       Date:  2012-05-01       Impact factor: 2.867

3.  Multidirectional Image Sensing for Microscopy Based on a Rotatable Robot.

Authors:  Yajing Shen; Wenfeng Wan; Lijun Zhang; Li Yong; Haojian Lu; Weili Ding
Journal:  Sensors (Basel)       Date:  2015-12-15       Impact factor: 3.576

Review 4.  A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

Authors:  C O S Sorzano; J Vargas; J Otón; J M de la Rosa-Trevín; J L Vilas; M Kazemi; R Melero; L Del Caño; J Cuenca; P Conesa; J Gómez-Blanco; R Marabini; J M Carazo
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.