Literature DB >> 22535949

Genomic comparison between a virulent type A1 strain of Francisella tularensis and its attenuated O-antigen mutant.

Thero Modise1, Cheryl Ryder, Shrinivasrao P Mane, Aloka B Bandara, Roderick V Jensen, Thomas J Inzana.   

Abstract

We report the complete genome sequences of TI0902, a highly virulent type A1 strain, and TIGB03, a related, attenuated chemical mutant strain. Compared to the wild type, the mutant strain had 45 point mutations and a 75.9-kb duplicated region that had not been previously observed in Francisella species.

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Year:  2012        PMID： 22535949      PMCID： PMC3347185          DOI： 10.1128/JB.00152-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  18 in total

1.  Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors:  Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043

Review 2.  Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.

Authors:  Francesca Finotello; Enrico Lavezzo; Paolo Fontana; Denis Peruzzo; Alessandro Albiero; Luisa Barzon; Marco Falda; Barbara Di Camillo; Stefano Toppo
Journal:  Brief Bioinform       Date:  2011-10-21       Impact factor: 11.622

Review 3.  Intracellular survival mechanisms of Francisella tularensis, a stealth pathogen.

Authors:  Anders Sjöstedt
Journal:  Microbes Infect       Date:  2005-09-15       Impact factor: 2.700

4.  Eukaryotic gene prediction using GeneMark.hmm-E and GeneMark-ES.

Authors:  Mark Borodovsky; Alex Lomsadze
Journal:  Curr Protoc Bioinformatics       Date:  2011-09

5.  The complete genome sequence of Francisella tularensis, the causative agent of tularemia.

Authors:  Pär Larsson; Petra C F Oyston; Patrick Chain; May C Chu; Melanie Duffield; Hans-Henrik Fuxelius; Emilio Garcia; Greger Hälltorp; Daniel Johansson; Karen E Isherwood; Peter D Karp; Eva Larsson; Ying Liu; Stephen Michell; Joann Prior; Richard Prior; Stephanie Malfatti; Anders Sjöstedt; Kerstin Svensson; Nick Thompson; Lisa Vergez; Jonathan K Wagg; Brendan W Wren; Luther E Lindler; Siv G E Andersson; Mats Forsman; Richard W Titball
Journal:  Nat Genet       Date:  2005-01-09       Impact factor: 38.330

6.  Genomic markers for differentiation of Francisella tularensis subsp. tularensis A.I and A.II strains.

Authors:  Claudia R Molins-Schneekloth; John T Belisle; Jeannine M Petersen
Journal:  Appl Environ Microbiol       Date:  2007-11-16       Impact factor: 4.792

7.  Characterization of a wild-type strain of Francisella tularensis isolated from a cat.

Authors:  Thomas J Inzana; Gretchen E Glindemann; Gerald Snider; Susan Gardner; Lisa Crofton; Barbara Byrne; Joseph Harper
Journal:  J Vet Diagn Invest       Date:  2004-09       Impact factor: 1.279

8.  Shigella flexneri phagosomal escape is independent of invasion.

Authors:  Susanne Paetzold; Sebastian Lourido; Bärbel Raupach; Arturo Zychlinsky
Journal:  Infect Immun       Date:  2007-07-30       Impact factor: 3.441

9.  Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.

Authors:  Foo Cheung; Brian J Haas; Susanne M D Goldberg; Gregory D May; Yongli Xiao; Christopher D Town
Journal:  BMC Genomics       Date:  2006-10-24       Impact factor: 3.969

10.  Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda).

Authors:  Aaron R Jex; Min Hu; D Timothy J Littlewood; Andrea Waeschenbach; Robin B Gasser
Journal:  BMC Genomics       Date:  2008-01-11       Impact factor: 3.969
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  9 in total

1.  Natural Selection in Virulence Genes of Francisella tularensis.

Authors:  Mark K Gunnell; Richard A Robison; Byron J Adams
Journal:  J Mol Evol       Date:  2016-05-13       Impact factor: 2.395

2.  Glycosylation of a Capsule-Like Complex (CLC) by Francisella novicida Is Required for Virulence and Partial Protective Immunity in Mice.

Authors:  Kelly C Freudenberger Catanzaro; Anna E Champion; Nrusingh Mohapatra; Thomas Cecere; Thomas J Inzana
Journal:  Front Microbiol       Date:  2017-05-30       Impact factor: 5.640

3.  Revisiting Francisella tularensis subsp. holarctica, Causative Agent of Tularemia in Germany With Bioinformatics: New Insights in Genome Structure, DNA Methylation and Comparative Phylogenetic Analysis.

Authors:  Anne Busch; Prasad Thomas; Eric Zuchantke; Holger Brendebach; Kerstin Neubert; Josephine Gruetzke; Sascha Al Dahouk; Martin Peters; Helmut Hotzel; Heinrich Neubauer; Herbert Tomaso
Journal:  Front Microbiol       Date:  2018-03-13       Impact factor: 5.640

4.  HMD-ARG: hierarchical multi-task deep learning for annotating antibiotic resistance genes.

Authors:  Yu Li; Zeling Xu; Wenkai Han; Huiluo Cao; Ramzan Umarov; Aixin Yan; Ming Fan; Huan Chen; Carlos M Duarte; Lihua Li; Pak-Leung Ho; Xin Gao
Journal:  Microbiome       Date:  2021-02-08       Impact factor: 14.650

5.  Intraspecies characterization of bacteria via evolutionary modeling of protein domains.

Authors:  Iva Budimir; Enrico Giampieri; Edoardo Saccenti; Maria Suarez-Diez; Martina Tarozzi; Daniele Dall'Olio; Alessandra Merlotti; Nico Curti; Daniel Remondini; Gastone Castellani; Claudia Sala
Journal:  Sci Rep       Date:  2022-10-05       Impact factor: 4.996

6.  Francisella tularensis Subtype A.II Genomic Plasticity in Comparison with Subtype A.I.

Authors:  Marilynn A Larson; Ufuk Nalbantoglu; Khalid Sayood; Emily B Zentz; Amanda M Bartling; Stephen C Francesconi; Paul D Fey; Michael P Dempsey; Steven H Hinrichs
Journal:  PLoS One       Date:  2015-04-28       Impact factor: 3.240

Review 7.  Comparative review of Francisella tularensis and Francisella novicida.

Authors:  Luke C Kingry; Jeannine M Petersen
Journal:  Front Cell Infect Microbiol       Date:  2014-03-13       Impact factor: 5.293

8.  Genome sequence and phenotypic analysis of a first German Francisella sp. isolate (W12-1067) not belonging to the species Francisella tularensis.

Authors:  Kerstin Rydzewski; Tino Schulz; Elzbieta Brzuszkiewicz; Gudrun Holland; Christian Lück; Jens Fleischer; Roland Grunow; Klaus Heuner
Journal:  BMC Microbiol       Date:  2014-06-25       Impact factor: 3.605

9.  Further Characterization of the Capsule-Like Complex (CLC) Produced by Francisella tularensis Subspecies tularensis: Protective Efficacy and Similarity to Outer Membrane Vesicles.

Authors:  Anna E Champion; Aloka B Bandara; Nrusingh Mohapatra; Kelly M Fulton; Susan M Twine; Thomas J Inzana
Journal:  Front Cell Infect Microbiol       Date:  2018-06-15       Impact factor: 5.293
  9 in total

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