Literature DB >> 22535939

Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank.

Gilda Rose S Amaral1, Bruno Sergio de O Silva, Eidy O Santos, Graciela M Dias, Rubens M Lopes, Robert A Edwards, Cristiane C Thompson, Fabiano L Thompson.   

Abstract

Vibrio campbellii PEL22A was isolated from open ocean water in the Abrolhos Bank. The genome of PEL22A consists of 6,788,038 bp (the GC content is 45%). The number of coding sequences (CDS) is 6,359, as determined according to the Rapid Annotation using Subsystem Technology (RAST) server. The number of ribosomal genes is 80, of which 68 are tRNAs and 12 are rRNAs. V. campbellii PEL22A contains genes related to virulence and fitness, including a complete proteorhodopsin cluster, complete type II and III secretion systems, incomplete type I, IV, and VI secretion systems, a hemolysin, and CTXΦ.

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Year:  2012        PMID： 22535939      PMCID： PMC3347166          DOI： 10.1128/JB.00377-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

Review 2.  Biodiversity of vibrios.

Authors:  Fabiano L Thompson; Tetsuya Iida; Jean Swings
Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

3.  Genome sequence of the marine bacterium Vibrio campbellii DS40M4, isolated from open ocean water.

Authors:  Graciela M Dias; Cristiane C Thompson; Brian Fishman; Hiroaki Naka; Margo G Haygood; Jorge H Crosa; Fabiano L Thompson
Journal:  J Bacteriol       Date:  2012-02       Impact factor: 3.490

Review 4.  Haemolysins in Vibrio species.

Authors:  X-H Zhang; B Austin
Journal:  J Appl Microbiol       Date:  2005       Impact factor: 3.772

5.  Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host.

Authors:  A Martinez; A S Bradley; J R Waldbauer; R E Summons; E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

6.  An integrated semiconductor device enabling non-optical genome sequencing.

Authors:  Jonathan M Rothberg; Wolfgang Hinz; Todd M Rearick; Jonathan Schultz; William Mileski; Mel Davey; John H Leamon; Kim Johnson; Mark J Milgrew; Matthew Edwards; Jeremy Hoon; Jan F Simons; David Marran; Jason W Myers; John F Davidson; Annika Branting; John R Nobile; Bernard P Puc; David Light; Travis A Clark; Martin Huber; Jeffrey T Branciforte; Isaac B Stoner; Simon E Cawley; Michael Lyons; Yutao Fu; Nils Homer; Marina Sedova; Xin Miao; Brian Reed; Jeffrey Sabina; Erika Feierstein; Michelle Schorn; Mohammad Alanjary; Eileen Dimalanta; Devin Dressman; Rachel Kasinskas; Tanya Sokolsky; Jacqueline A Fidanza; Eugeni Namsaraev; Kevin J McKernan; Alan Williams; G Thomas Roth; James Bustillo
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

7.  Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation.

Authors:  Laura Gómez-Consarnau; Neelam Akram; Kristoffer Lindell; Anders Pedersen; Richard Neutze; Debra L Milton; José M González; Jarone Pinhassi
Journal:  PLoS Biol       Date:  2010-04-27       Impact factor: 8.029

8.  Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms.

Authors:  Bruno Gomez-Gil; Sonia Soto-Rodríguez; Alejandra García-Gasca; Ana Roque; Ricardo Vazquez-Juarez; Fabiano L Thompson; Jean Swings
Journal:  Microbiology       Date:  2004-06       Impact factor: 2.777

9.  Genomic taxonomy of Vibrios.

Authors:  Cristiane C Thompson; Ana Carolina P Vicente; Rangel C Souza; Ana Tereza R Vasconcelos; Tammi Vesth; Nelson Alves; David W Ussery; Tetsuya Iida; Fabiano L Thompson
Journal:  BMC Evol Biol       Date:  2009-10-27       Impact factor: 3.260

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  4 in total

Review 1.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

2.  Plasmid- and chromosome-encoded siderophore anguibactin systems found in marine vibrios: biosynthesis, transport and evolution.

Authors:  Hiroaki Naka; Moqing Liu; Luis A Actis; Jorge H Crosa
Journal:  Biometals       Date:  2013-05-10       Impact factor: 2.949

3.  Contrasting inter- and intraspecies recombination patterns in the "Harveyi clade" vibrio collected over large spatial and temporal scales.

Authors:  Henryk Urbanczyk; Yoshitoshi Ogura; Tetsuya Hayashi
Journal:  Genome Biol Evol       Date:  2014-12-19       Impact factor: 3.416

4.  Genome Sequence of Vibrio campbellii Strain UMTGB204, a Marine Bacterium Isolated from a Green Barrel Tunicate.

Authors:  Huan You Gan; Mohd Ezhar Mohd Noor; Nur Azna Saari; Najiah Musa; Baharim Mustapha; Gires Usup; Muhd Danish-Daniel
Journal:  Genome Announc       Date:  2015-03-26
  4 in total

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