Literature DB >> 22521361

Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries.

Michael E Talkowski1, Jill A Rosenfeld, Ian Blumenthal, Vamsee Pillalamarri, Colby Chiang, Adrian Heilbut, Carl Ernst, Carrie Hanscom, Elizabeth Rossin, Amelia M Lindgren, Shahrin Pereira, Douglas Ruderfer, Andrew Kirby, Stephan Ripke, David J Harris, Ji-Hyun Lee, Kyungsoo Ha, Hyung-Goo Kim, Benjamin D Solomon, Andrea L Gropman, Diane Lucente, Katherine Sims, Toshiro K Ohsumi, Mark L Borowsky, Stephanie Loranger, Bradley Quade, Kasper Lage, Judith Miles, Bai-Lin Wu, Yiping Shen, Benjamin Neale, Lisa G Shaffer, Mark J Daly, Cynthia C Morton, James F Gusella.   

Abstract

Balanced chromosomal abnormalities (BCAs) represent a relatively untapped reservoir of single-gene disruptions in neurodevelopmental disorders (NDDs). We sequenced BCAs in patients with autism or related NDDs, revealing disruption of 33 loci in four general categories: (1) genes previously associated with abnormal neurodevelopment (e.g., AUTS2, FOXP1, and CDKL5), (2) single-gene contributors to microdeletion syndromes (MBD5, SATB2, EHMT1, and SNURF-SNRPN), (3) novel risk loci (e.g., CHD8, KIRREL3, and ZNF507), and (4) genes associated with later-onset psychiatric disorders (e.g., TCF4, ZNF804A, PDE10A, GRIN2B, and ANK3). We also discovered among neurodevelopmental cases a profoundly increased burden of copy-number variants from these 33 loci and a significant enrichment of polygenic risk alleles from genome-wide association studies of autism and schizophrenia. Our findings suggest a polygenic risk model of autism and reveal that some neurodevelopmental genes are sensitive to perturbation by multiple mutational mechanisms, leading to variable phenotypic outcomes that manifest at different life stages.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22521361      PMCID: PMC3340505          DOI: 10.1016/j.cell.2012.03.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  42 in total

1.  CHD8 interacts with CHD7, a protein which is mutated in CHARGE syndrome.

Authors:  Tserendulam Batsukh; Lasse Pieper; Anna M Koszucka; Nina von Velsen; Sigrid Hoyer-Fender; Miriam Elbracht; Jorieke E H Bergman; Lies H Hoefsloot; Silke Pauli
Journal:  Hum Mol Genet       Date:  2010-05-07       Impact factor: 6.150

2.  Mutations in GRIN2A and GRIN2B encoding regulatory subunits of NMDA receptors cause variable neurodevelopmental phenotypes.

Authors:  Sabine Endele; Georg Rosenberger; Kirsten Geider; Bernt Popp; Ceyhun Tamer; Irina Stefanova; Mathieu Milh; Fanny Kortüm; Angela Fritsch; Friederike K Pientka; Yorck Hellenbroich; Vera M Kalscheuer; Jürgen Kohlhase; Ute Moog; Gudrun Rappold; Anita Rauch; Hans-Hilger Ropers; Sarah von Spiczak; Holger Tönnies; Nathalie Villeneuve; Laurent Villard; Bernhard Zabel; Martin Zenker; Bodo Laube; André Reis; Dagmar Wieczorek; Lionel Van Maldergem; Kerstin Kutsche
Journal:  Nat Genet       Date:  2010-10-03       Impact factor: 38.330

3.  TCF4, schizophrenia, and Pitt-Hopkins Syndrome.

Authors:  Derek J Blake; Marc Forrest; Ria M Chapman; Caroline L Tinsley; Michael C O'Donovan; Michael J Owen
Journal:  Schizophr Bull       Date:  2010-04-26       Impact factor: 9.306

4.  Psychosis susceptibility gene ZNF804A and cognitive performance in schizophrenia.

Authors:  James T R Walters; Aiden Corvin; Michael J Owen; Hywel Williams; Milan Dragovic; Emma M Quinn; Róisín Judge; Daniel J Smith; Nadine Norton; Ina Giegling; Annette M Hartmann; Hans-Jürgen Möller; Pierandrea Muglia; Valentina Moskvina; Sarah Dwyer; Therese O'Donoghue; Bharti Morar; Matthew Cooper; David Chandler; Assen Jablensky; Michael Gill; Luba Kaladjieva; Derek W Morris; Michael C O'Donovan; Dan Rujescu; Gary Donohoe
Journal:  Arch Gen Psychiatry       Date:  2010-07

5.  Quantitative comparison of phosphodiesterase mRNA distribution in human brain and peripheral tissues.

Authors:  Viktor Lakics; Eric H Karran; Frank G Boess
Journal:  Neuropharmacology       Date:  2010-05-21       Impact factor: 5.250

6.  Analysis of a t(18;21)(p11.1;p11.1) translocation in a family with schizophrenia.

Authors:  Joanne M A Meerabux; Hisako Ohba; Yoshimi Iwayama; Motoko Maekawa; Sevilla D Detera-Wadleigh; Lynn E DeLisi; Takeo Yoshikawa
Journal:  J Hum Genet       Date:  2009-05-22       Impact factor: 3.172

7.  Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders.

Authors:  Jill A Rosenfeld; Blake C Ballif; Beth S Torchia; Trilochan Sahoo; J Britt Ravnan; Roger Schultz; Allen Lamb; Bassem A Bejjani; Lisa G Shaffer
Journal:  Genet Med       Date:  2010-11       Impact factor: 8.822

8.  Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.

Authors:  Colby Chiang; Jessie C Jacobsen; Carl Ernst; Carrie Hanscom; Adrian Heilbut; Ian Blumenthal; Ryan E Mills; Andrew Kirby; Amelia M Lindgren; Skye R Rudiger; Clive J McLaughlan; C Simon Bawden; Suzanne J Reid; Richard L M Faull; Russell G Snell; Ira M Hall; Yiping Shen; Toshiro K Ohsumi; Mark L Borowsky; Mark J Daly; Charles Lee; Cynthia C Morton; Marcy E MacDonald; James F Gusella; Michael E Talkowski
Journal:  Nat Genet       Date:  2012-03-04       Impact factor: 38.330

9.  A genome-wide linkage and association scan reveals novel loci for autism.

Authors:  Lauren A Weiss; Dan E Arking; Mark J Daly; Aravinda Chakravarti
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

10.  Genotype-phenotype analysis of TCF4 mutations causing Pitt-Hopkins syndrome shows increased seizure activity with missense mutations.

Authors:  Jill A Rosenfeld; Kathleen Leppig; Blake C Ballif; Heidi Thiese; Christine Erdie-Lalena; Erwati Bawle; Sujatha Sastry; J Edward Spence; Anne Bandholz; Urvashi Surti; Jonathan Zonana; Kory Keller; Wendy Meschino; Bassem A Bejjani; Beth S Torchia; Lisa G Shaffer
Journal:  Genet Med       Date:  2009-11       Impact factor: 8.822

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  266 in total

Review 1.  Genetics and genomics of psychiatric disease.

Authors:  Daniel H Geschwind; Jonathan Flint
Journal:  Science       Date:  2015-09-24       Impact factor: 47.728

2.  Chd8 Mutation Leads to Autistic-like Behaviors and Impaired Striatal Circuits.

Authors:  Randall J Platt; Yang Zhou; Ian M Slaymaker; Ashwin S Shetty; Niels R Weisbach; Jin-Ah Kim; Jitendra Sharma; Mitul Desai; Sabina Sood; Hannah R Kempton; Gerald R Crabtree; Guoping Feng; Feng Zhang
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

3.  Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.

Authors:  Ryan K C Yuen; Daniele Merico; Matt Bookman; Jennifer L Howe; Bhooma Thiruvahindrapuram; Rohan V Patel; Joe Whitney; Nicole Deflaux; Jonathan Bingham; Zhuozhi Wang; Giovanna Pellecchia; Janet A Buchanan; Susan Walker; Christian R Marshall; Mohammed Uddin; Mehdi Zarrei; Eric Deneault; Lia D'Abate; Ada J S Chan; Stephanie Koyanagi; Tara Paton; Sergio L Pereira; Ny Hoang; Worrawat Engchuan; Edward J Higginbotham; Karen Ho; Sylvia Lamoureux; Weili Li; Jeffrey R MacDonald; Thomas Nalpathamkalam; Wilson W L Sung; Fiona J Tsoi; John Wei; Lizhen Xu; Anne-Marie Tasse; Emily Kirby; William Van Etten; Simon Twigger; Wendy Roberts; Irene Drmic; Sanne Jilderda; Bonnie MacKinnon Modi; Barbara Kellam; Michael Szego; Cheryl Cytrynbaum; Rosanna Weksberg; Lonnie Zwaigenbaum; Marc Woodbury-Smith; Jessica Brian; Lili Senman; Alana Iaboni; Krissy Doyle-Thomas; Ann Thompson; Christina Chrysler; Jonathan Leef; Tal Savion-Lemieux; Isabel M Smith; Xudong Liu; Rob Nicolson; Vicki Seifer; Angie Fedele; Edwin H Cook; Stephen Dager; Annette Estes; Louise Gallagher; Beth A Malow; Jeremy R Parr; Sarah J Spence; Jacob Vorstman; Brendan J Frey; James T Robinson; Lisa J Strug; Bridget A Fernandez; Mayada Elsabbagh; Melissa T Carter; Joachim Hallmayer; Bartha M Knoppers; Evdokia Anagnostou; Peter Szatmari; Robert H Ring; David Glazer; Mathew T Pletcher; Stephen W Scherer
Journal:  Nat Neurosci       Date:  2017-03-06       Impact factor: 24.884

Review 4.  The role of AUTS2 in neurodevelopment and human evolution.

Authors:  Nir Oksenberg; Nadav Ahituv
Journal:  Trends Genet       Date:  2013-09-02       Impact factor: 11.639

5.  De Novo Mutations and Rare Variants Occurring in NMDA Receptors.

Authors:  Wenshu XiangWei; Yuwu Jiang; Hongjie Yuan
Journal:  Curr Opin Physiol       Date:  2017-12-27

6.  Implication of LRRC4C and DPP6 in neurodevelopmental disorders.

Authors:  Gilles Maussion; Cristiana Cruceanu; Jill A Rosenfeld; Scott C Bell; Fabrice Jollant; Jin Szatkiewicz; Ryan L Collins; Carrie Hanscom; Ilaria Kolobova; Nicolas Menjot de Champfleur; Ian Blumenthal; Colby Chiang; Vanessa Ota; Christina Hultman; Colm O'Dushlaine; Steve McCarroll; Martin Alda; Sebastien Jacquemont; Zehra Ordulu; Christian R Marshall; Melissa T Carter; Lisa G Shaffer; Pamela Sklar; Santhosh Girirajan; Cynthia C Morton; James F Gusella; Gustavo Turecki; Dimitri J Stavropoulos; Patrick F Sullivan; Stephen W Scherer; Michael E Talkowski; Carl Ernst
Journal:  Am J Med Genet A       Date:  2016-10-19       Impact factor: 2.802

7.  Autism-linked CHD gene expression patterns during development predict multi-organ disease phenotypes.

Authors:  Sahrunizam Kasah; Christopher Oddy; M Albert Basson
Journal:  J Anat       Date:  2018-10-02       Impact factor: 2.610

8.  Disruption of MBD5 contributes to a spectrum of psychopathology and neurodevelopmental abnormalities.

Authors:  J C Hodge; E Mitchell; V Pillalamarri; T L Toler; F Bartel; H M Kearney; Y S Zou; W H Tan; C Hanscom; S Kirmani; R R Hanson; S A Skinner; R C Rogers; D B Everman; E Boyd; C Tapp; S V Mullegama; D Keelean-Fuller; C M Powell; S H Elsea; C C Morton; J F Gusella; B DuPont; A Chaubey; A E Lin; M E Talkowski
Journal:  Mol Psychiatry       Date:  2013-04-16       Impact factor: 15.992

9.  Building a schizophrenia genetic network: transcription factor 4 regulates genes involved in neuronal development and schizophrenia risk.

Authors:  Hanzhang Xia; Fay M Jahr; Nak-Kyeong Kim; Linying Xie; Andrey A Shabalin; Julien Bryois; Douglas H Sweet; Mohamad M Kronfol; Preetha Palasuberniam; MaryPeace McRae; Brien P Riley; Patrick F Sullivan; Edwin J van den Oord; Joseph L McClay
Journal:  Hum Mol Genet       Date:  2018-09-15       Impact factor: 6.150

10.  Adenomatous polyposis coli protein deletion leads to cognitive and autism-like disabilities.

Authors:  J L Mohn; J Alexander; A Pirone; C D Palka; S-Y Lee; L Mebane; P G Haydon; M H Jacob
Journal:  Mol Psychiatry       Date:  2014-06-17       Impact factor: 15.992

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