Literature DB >> 22509525

Cis-regulatory logic driving glial cells missing: self-sustaining circuitry in later embryogenesis.

Andrew Ransick1, Eric H Davidson.   

Abstract

The glial cells missing (gcm) regulatory gene of the sea urchin Strongylocentrotus purpuratus is first expressed in veg2 daughter cells as the genomic target of late cleavage stage Delta-Notch signaling from the skeletogenic mesoderm precursors. Gcm is required in veg2 progeny during late cleavages for the early phase of pigment cell precursor specification. Here we report on a later acting cis-regulatory module that assumes control of gcm expression by the early mesenchyme blastula stage and maintains it through pigment cell differentiation and dispersal. Cis-perturbation analyses reveal that the two critical elements within this late module are consensus matches to Gcm and Six1 binding sites. Significantly, six1 mRNA localizes to gcm+cells from the mesenchyme blastula stage onwards. Trans-perturbations with anti-sense morpholinos reveal a co-dependency between six1 and gcm. Six1 mRNA levels fall sharply after Gcm is depleted, while depleting Six1 leads to significant reductions in output of endogenous gcm or modular-reporters. These results support the conclusion gcm and six1 comprise a positive intergenic feedback loop in the mesodermal GRN. This often employed cross regulatory GRN feature here ensures self-sustaining gcm output in a cohort of fully specified pigment cell precursors at a relatively early developmental stage.

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Year:  2012        PMID: 22509525      PMCID: PMC3561781          DOI: 10.1016/j.ydbio.2012.02.003

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  37 in total

1.  Expression patterns of four different regulatory genes that function during sea urchin development.

Authors:  Takuya Minokawa; Jonathan P Rast; Cesar Arenas-Mena; Christopher B Franco; Eric H Davidson
Journal:  Gene Expr Patterns       Date:  2004-07       Impact factor: 1.224

2.  Expression of Spgatae, the Strongylocentrotus purpuratus ortholog of vertebrate GATA4/5/6 factors.

Authors:  Pei Yun Lee; Eric H Davidson
Journal:  Gene Expr Patterns       Date:  2004-12       Impact factor: 1.224

3.  Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.

Authors:  Nathan C Shaner; Robert E Campbell; Paul A Steinbach; Ben N G Giepmans; Amy E Palmer; Roger Y Tsien
Journal:  Nat Biotechnol       Date:  2004-11-21       Impact factor: 54.908

4.  Introduction of cloned DNA into sea urchin egg cytoplasm: replication and persistence during embryogenesis.

Authors:  A P McMahon; C N Flytzanis; B R Hough-Evans; K S Katula; R J Britten; E H Davidson
Journal:  Dev Biol       Date:  1985-04       Impact factor: 3.582

5.  Migratory and invasive behavior of pigment cells in normal and animalized sea urchin embryos.

Authors:  A W Gibson; R D Burke
Journal:  Exp Cell Res       Date:  1987-12       Impact factor: 3.905

6.  Behavior of pigment cells closely correlates the manner of gastrulation in sea urchin embryos.

Authors:  Hiromi Takata; Tetsuya Kominami
Journal:  Zoolog Sci       Date:  2004-10       Impact factor: 0.931

7.  LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo.

Authors:  D R Sherwood; D R McClay
Journal:  Development       Date:  1999-04       Impact factor: 6.868

Review 8.  Spatial mechanisms of gene regulation in metazoan embryos.

Authors:  E H Davidson
Journal:  Development       Date:  1991-09       Impact factor: 6.868

9.  Simple and highly efficient BAC recombineering using galK selection.

Authors:  Søren Warming; Nina Costantino; Donald L Court; Nancy A Jenkins; Neal G Copeland
Journal:  Nucleic Acids Res       Date:  2005-02-24       Impact factor: 16.971

10.  Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.

Authors:  C Titus Brown; Yuan Xie; Eric H Davidson; R Andrew Cameron
Journal:  BMC Bioinformatics       Date:  2005-03-24       Impact factor: 3.169

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  24 in total

1.  Genome-wide assessment of differential effector gene use in embryogenesis.

Authors:  Julius C Barsi; Qiang Tu; Cristina Calestani; Eric H Davidson
Journal:  Development       Date:  2015-09-28       Impact factor: 6.868

Review 2.  Lineage specification in the fly nervous system and evolutionary implications.

Authors:  Pierre B Cattenoz; Angela Giangrande
Journal:  Cell Cycle       Date:  2013-08-07       Impact factor: 4.534

3.  Geometric control of ciliated band regulatory states in the sea urchin embryo.

Authors:  Julius C Barsi; Enhu Li; Eric H Davidson
Journal:  Development       Date:  2015-02-05       Impact factor: 6.868

4.  How Does the Regulatory Genome Work?

Authors:  Sorin Istrail; Isabelle S Peter
Journal:  J Comput Biol       Date:  2019-06-04       Impact factor: 1.479

Review 5.  Regulatory states in the developmental control of gene expression.

Authors:  Isabelle S Peter
Journal:  Brief Funct Genomics       Date:  2017-09-01       Impact factor: 4.241

6.  Assessing regulatory information in developmental gene regulatory networks.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-06       Impact factor: 11.205

7.  Encoding regulatory state boundaries in the pregastrular oral ectoderm of the sea urchin embryo.

Authors:  Enhu Li; Miao Cui; Isabelle S Peter; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-20       Impact factor: 11.205

8.  Conserved regulatory state expression controlled by divergent developmental gene regulatory networks in echinoids.

Authors:  Eric M Erkenbrack; Eric H Davidson; Isabelle S Peter
Journal:  Development       Date:  2018-12-18       Impact factor: 6.868

Review 9.  Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms.

Authors:  Katherine M Buckley; Ping Dong; R Andrew Cameron; Jonathan P Rast
Journal:  Brief Funct Genomics       Date:  2018-09-27       Impact factor: 4.241

10.  Diversification of oral and aboral mesodermal regulatory states in pregastrular sea urchin embryos.

Authors:  Stefan C Materna; Andrew Ransick; Enhu Li; Eric H Davidson
Journal:  Dev Biol       Date:  2012-12-19       Impact factor: 3.582

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