Literature DB >> 22509016

Midlife gene expressions identify modulators of aging through dietary interventions.

Bing Zhou1, Liu Yang, Shoufeng Li, Jialiang Huang, Haiyang Chen, Lei Hou, Jinbo Wang, Christopher D Green, Zhen Yan, Xun Huang, Matt Kaeberlein, Li Zhu, Huasheng Xiao, Yong Liu, Jing-Dong J Han.   

Abstract

Dietary interventions are effective ways to extend or shorten lifespan. By examining midlife hepatic gene expressions in mice under different dietary conditions, which resulted in different lifespans and aging-related phenotypes, we were able to identify genes and pathways that modulate the aging process. We found that pathways transcriptionally correlated with diet-modulated lifespan and physiological changes were enriched for lifespan-modifying genes. Intriguingly, mitochondrial gene expression correlated with lifespan and anticorrelated with aging-related pathological changes, whereas peroxisomal gene expression showed an opposite trend. Both organelles produce reactive oxygen species, a proposed causative factor of aging. This finding implicates a contribution of peroxisome to aging. Consistent with this hypothesis, lowering the expression levels of peroxisome proliferation genes decreased the cellular peroxide levels and extended the lifespan of Drosophila melanogaster and Caenorhabditis elegans. These findings show that transcriptional changes resulting from dietary interventions can effectively reflect causal factors in aging and identify previously unknown or under-appreciated longevity pathways, such as the peroxisome pathway.

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Year:  2012        PMID: 22509016      PMCID: PMC3358859          DOI: 10.1073/pnas.1119304109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

Authors:  Steven A McCarroll; Coleen T Murphy; Sige Zou; Scott D Pletcher; Chen-Shan Chin; Yuh Nung Jan; Cynthia Kenyon; Cornelia I Bargmann; Hao Li
Journal:  Nat Genet       Date:  2004-01-18       Impact factor: 38.330

2.  Histone demethylase UTX-1 regulates C. elegans life span by targeting the insulin/IGF-1 signaling pathway.

Authors:  Chunyu Jin; Jing Li; Christopher D Green; Xiaoming Yu; Xia Tang; Dali Han; Bo Xian; Dan Wang; Xinxin Huang; Xiongwen Cao; Zheng Yan; Lei Hou; Jiancheng Liu; Nicholas Shukeir; Philipp Khaitovich; Charlie D Chen; Hong Zhang; Thomas Jenuwein; Jing-Dong J Han
Journal:  Cell Metab       Date:  2011-08-03       Impact factor: 27.287

3.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

4.  Differential effects of intermittent feeding and voluntary exercise on body weight and lifespan in adult rats.

Authors:  C L Goodrick; D K Ingram; M A Reynolds; J R Freeman; N L Cider
Journal:  J Gerontol       Date:  1983-01

5.  Small molecule activators of SIRT1 as therapeutics for the treatment of type 2 diabetes.

Authors:  Jill C Milne; Philip D Lambert; Simon Schenk; David P Carney; Jesse J Smith; David J Gagne; Lei Jin; Olivier Boss; Robert B Perni; Chi B Vu; Jean E Bemis; Roger Xie; Jeremy S Disch; Pui Yee Ng; Joseph J Nunes; Amy V Lynch; Hongying Yang; Heidi Galonek; Kristine Israelian; Wendy Choy; Andre Iffland; Siva Lavu; Oliver Medvedik; David A Sinclair; Jerrold M Olefsky; Michael R Jirousek; Peter J Elliott; Christoph H Westphal
Journal:  Nature       Date:  2007-11-29       Impact factor: 49.962

6.  Transcriptional profiling of aging in human muscle reveals a common aging signature.

Authors:  Jacob M Zahn; Rebecca Sonu; Hannes Vogel; Emily Crane; Krystyna Mazan-Mamczarz; Ralph Rabkin; Ronald W Davis; Kevin G Becker; Art B Owen; Stuart K Kim
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

7.  Calorie restriction increases muscle mitochondrial biogenesis in healthy humans.

Authors:  Anthony E Civitarese; Stacy Carling; Leonie K Heilbronn; Mathew H Hulver; Barbara Ukropcova; Walter A Deutsch; Steven R Smith; Eric Ravussin
Journal:  PLoS Med       Date:  2007-03       Impact factor: 11.069

8.  Lifespan regulation by evolutionarily conserved genes essential for viability.

Authors:  Sean P Curran; Gary Ruvkun
Journal:  PLoS Genet       Date:  2007-02-27       Impact factor: 5.917

9.  A modular network model of aging.

Authors:  Huiling Xue; Bo Xian; Dong Dong; Kai Xia; Shanshan Zhu; Zhongnan Zhang; Lei Hou; Qingpeng Zhang; Yi Zhang; Jing-Dong J Han
Journal:  Mol Syst Biol       Date:  2007-12-04       Impact factor: 11.429

10.  AGEMAP: a gene expression database for aging in mice.

Authors:  Jacob M Zahn; Suresh Poosala; Art B Owen; Donald K Ingram; Ana Lustig; Arnell Carter; Ashani T Weeraratna; Dennis D Taub; Myriam Gorospe; Krystyna Mazan-Mamczarz; Edward G Lakatta; Kenneth R Boheler; Xiangru Xu; Mark P Mattson; Geppino Falco; Minoru S H Ko; David Schlessinger; Jeffrey Firman; Sarah K Kummerfeld; William H Wood; Alan B Zonderman; Stuart K Kim; Kevin G Becker
Journal:  PLoS Genet       Date:  2007-10-02       Impact factor: 5.917

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  29 in total

Review 1.  Mechanistic links between gut microbial community dynamics, microbial functions and metabolic health.

Authors:  Connie W Y Ha; Yan Y Lam; Andrew J Holmes
Journal:  World J Gastroenterol       Date:  2014-11-28       Impact factor: 5.742

2.  Identification and Application of Gene Expression Signatures Associated with Lifespan Extension.

Authors:  Alexander Tyshkovskiy; Perinur Bozaykut; Anastasia A Borodinova; Maxim V Gerashchenko; Gene P Ables; Michael Garratt; Philipp Khaitovich; Clary B Clish; Richard A Miller; Vadim N Gladyshev
Journal:  Cell Metab       Date:  2019-07-25       Impact factor: 27.287

3.  Peroxisomes contribute to oxidative stress in neurons during doxorubicin-based chemotherapy.

Authors:  Jose F Moruno-Manchon; Ndidi-Ese Uzor; Shelli R Kesler; Jeffrey S Wefel; Debra M Townley; Archana Sidalaghatta Nagaraja; Sunila Pradeep; Lingegowda S Mangala; Anil K Sood; Andrey S Tsvetkov
Journal:  Mol Cell Neurosci       Date:  2017-11-24       Impact factor: 4.314

Review 4.  Causal roles of mitochondrial dynamics in longevity and healthy aging.

Authors:  Arpit Sharma; Hannah J Smith; Pallas Yao; William B Mair
Journal:  EMBO Rep       Date:  2019-10-31       Impact factor: 8.807

Review 5.  Peroxisome deficient invertebrate and vertebrate animal models.

Authors:  Paul P Van Veldhoven; Myriam Baes
Journal:  Front Physiol       Date:  2013-11-22       Impact factor: 4.566

6.  A Systems Approach to Reverse Engineer Lifespan Extension by Dietary Restriction.

Authors:  Lei Hou; Dan Wang; Di Chen; Yi Liu; Yue Zhang; Hao Cheng; Chi Xu; Na Sun; Joseph McDermott; William B Mair; Jing-Dong J Han
Journal:  Cell Metab       Date:  2016-03-08       Impact factor: 27.287

7.  Caloric restriction promotes rapid expansion and long-lasting increase of Lactobacillus in the rat fecal microbiota.

Authors:  Cristina Fraumene; Valeria Manghina; Erika Cadoni; Fabio Marongiu; Marcello Abbondio; Monica Serra; Antonio Palomba; Alessandro Tanca; Ezio Laconi; Sergio Uzzau
Journal:  Gut Microbes       Date:  2017-09-21

8.  Aging lowers PEX5 levels in cortical neurons in male and female mouse brains.

Authors:  Ndidi-Ese Uzor; Diego Morales Scheihing; Gab Seok Kim; Jose Felix Moruno-Manchon; Liang Zhu; Caroline R Reynolds; Jessica M Stephenson; Aleah Holmes; Louise D McCullough; Andrey S Tsvetkov
Journal:  Mol Cell Neurosci       Date:  2020-08-07       Impact factor: 4.314

9.  ERCC1-deficient cells and mice are hypersensitive to lipid peroxidation.

Authors:  Jolanta Czerwińska; Małgorzata Nowak; Patrycja Wojtczak; Dorota Dziuban-Lech; Jarosław M Cieśla; Daria Kołata; Beata Gajewska; Anna Barańczyk-Kuźma; Andria R Robinson; Hillary L Shane; Siobhán Q Gregg; Lora H Rigatti; Matthew J Yousefzadeh; Aditi U Gurkar; Sara J McGowan; Konrad Kosicki; Małgorzata Bednarek; Ewelina Zarakowska; Daniel Gackowski; Ryszard Oliński; Elżbieta Speina; Laura J Niedernhofer; Barbara Tudek
Journal:  Free Radic Biol Med       Date:  2018-06-01       Impact factor: 7.376

10.  Systems biology in aging: linking the old and the young.

Authors:  Lei Hou; Jialiang Huang; Christopher D Green; Jerome Boyd-Kirkup; Wei Zhang; Xiaoming Yu; Wenxuan Gong; Bing Zhou; Jing-Dong J Han
Journal:  Curr Genomics       Date:  2012-11       Impact factor: 2.236

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