Literature DB >> 22505418

Crystallization of a novel metal-containing cupin from Acidobacterium sp. and preliminary diffraction data analysis.

Andrzej Łyskowski1, Kerstin Steiner, Ivan Hajnal, Georg Steinkellner, Helmut Schwab, Karl Gruber.   

Abstract

Recombinant AciX9_0562 from Acidobacterium sp. MP5ACTX9 (UniProt ID E8WYN5) containing sequence motifs characteristic of the RmlC-type cupins superfamily and containing Pfam motif PF07883 has been successfully cloned, expressed and purified. AciX9_0562 crystallized in a number of conditions from the Morpheus protein crystallization screen. The best crystal diffracted to 2.7 Å resolution (space group C222(1); unit-cell parameters a = 125.29, b = 254.63, c = 82.99 Å). Structure solution was facilitated by the automated molecular-replacement pipeline BALBES. The initial solution was automatically rebuilt using the PHENIX AutoBuild wizard, with final R and R(free) values of 0.23 and 0.26, respectively. The structure is currently undergoing manual refinement.
© 2012 International Union of Crystallography. All rights reserved.

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Year:  2012        PMID: 22505418      PMCID: PMC3325818          DOI: 10.1107/S1744309112006550

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Evolution of functional diversity in the cupin superfamily.

Authors:  J M Dunwell; A Culham; C E Carter; C R Sosa-Aguirre; P W Goodenough
Journal:  Trends Biochem Sci       Date:  2001-12       Impact factor: 13.807

Review 2.  Cupins: the most functionally diverse protein superfamily?

Authors:  Jim M Dunwell; Alan Purvis; Sawsan Khuri
Journal:  Phytochemistry       Date:  2004-01       Impact factor: 4.072

3.  Expanding screening space through the use of alternative reservoirs in vapor-diffusion experiments.

Authors:  Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

Review 4.  Cupins: a new superfamily of functionally diverse proteins that include germins and plant storage proteins.

Authors:  J M Dunwell
Journal:  Biotechnol Genet Eng Rev       Date:  1998

5.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

Review 6.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

7.  The MORPHEUS protein crystallization screen.

Authors:  Fabrice Gorrec
Journal:  J Appl Crystallogr       Date:  2009-11-07       Impact factor: 3.304

8.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  A simple and efficient expression and purification system using two newly constructed vectors.

Authors:  Huanting Liu; James H Naismith
Journal:  Protein Expr Purif       Date:  2008-09-20       Impact factor: 1.650

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  1 in total

1.  Discovery of a novel (R)-selective bacterial hydroxynitrile lyase from Acidobacterium capsulatum.

Authors:  Romana Wiedner; Mandana Gruber-Khadjawi; Helmut Schwab; Kerstin Steiner
Journal:  Comput Struct Biotechnol J       Date:  2014-07-08       Impact factor: 7.271

  1 in total

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