Literature DB >> 22499728

Evaluating a new marker for risk prediction using the test tradeoff: an update.

Stuart G Baker1, Ben Van Calster, Ewout W Steyerberg.   

Abstract

Most of the methodological literature on evaluating an additional marker for risk prediction involves purely statistical measures of classification performance. A disadvantage of a purely statistical measure is the difficulty in deciding the improvement in the measure that would make inclusion of the additional marker worthwhile. In contrast, a medical decision making approach can weigh the cost or harm of ascertaining an additional marker against the benefit of a higher true positive rate for a given false positive rate that may be associated with risk prediction involving the additional marker. An appealing form of the medical decision making approach involves the risk threshold, which is the risk at which the expected utility of treatment and no treatment is the same. In this framework, a readily interpretable evaluation of the net benefit of an additional marker is the test tradeoff corresponding to the risk threshold. The test tradeoff is the minimum number of tests for a new marker that need to be traded for a true positive to yield an increase in the net benefit of risk prediction with the additional marker. For a sensitivity analysis the test tradeoff is computed over multiple risk thresholds. This article updates the theory and estimation of the test tradeoff. An example is provided.

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Year:  2012        PMID: 22499728     DOI: 10.1515/1557-4679.1395

Source DB:  PubMed          Journal:  Int J Biostat        ISSN: 1557-4679            Impact factor:   0.968


  15 in total

1.  Vardeman, S. B. and Morris, M. D. (2013), "Majority Voting by Independent Classifiers can Increase Error Rates," The American Statistician, 67, 94-96: Comment by Baker, Xu, Hu, and Huang and Reply.

Authors:  Stuart G Baker; Jian-Lun Xu; Ping Hu; Peng Huang
Journal:  Am Stat       Date:  2014-05       Impact factor: 8.710

2.  Evaluating Prognostic Markers Using Relative Utility Curves and Test Tradeoffs.

Authors:  Stuart G Baker; Barnett S Kramer
Journal:  J Clin Oncol       Date:  2015-06-29       Impact factor: 44.544

3.  Decision Curves and Relative Utility Curves.

Authors:  Stuart G Baker
Journal:  Med Decis Making       Date:  2019-05-20       Impact factor: 2.583

Review 4.  Evaluation of markers and risk prediction models: overview of relationships between NRI and decision-analytic measures.

Authors:  Ben Van Calster; Andrew J Vickers; Michael J Pencina; Stuart G Baker; Dirk Timmerman; Ewout W Steyerberg
Journal:  Med Decis Making       Date:  2013-01-11       Impact factor: 2.583

5.  Predictive accuracy of the Liverpool Lung Project risk model for stratifying patients for computed tomography screening for lung cancer: a case-control and cohort validation study.

Authors:  Olaide Y Raji; Stephen W Duffy; Olorunshola F Agbaje; Stuart G Baker; David C Christiani; Adrian Cassidy; John K Field
Journal:  Ann Intern Med       Date:  2012-08-21       Impact factor: 25.391

6.  Comparing diagnostic tests on benefit-risk.

Authors:  Gene Pennello; Norberto Pantoja-Galicia; Scott Evans
Journal:  J Biopharm Stat       Date:  2016-08-22       Impact factor: 1.051

7.  The summary test tradeoff: a new measure of the value of an additional risk prediction marker.

Authors:  Stuart G Baker
Journal:  Stat Med       Date:  2017-12-10       Impact factor: 2.373

8.  Beyond discrimination: A comparison of calibration methods and clinical usefulness of predictive models of readmission risk.

Authors:  Colin G Walsh; Kavya Sharman; George Hripcsak
Journal:  J Biomed Inform       Date:  2017-10-24       Impact factor: 6.317

9.  How to interpret a small increase in AUC with an additional risk prediction marker: decision analysis comes through.

Authors:  Stuart G Baker; Ewoud Schuit; Ewout W Steyerberg; Michael J Pencina; Andrew Vickers; Andew Vickers; Karel G M Moons; Ben W J Mol; Karen S Lindeman
Journal:  Stat Med       Date:  2014-05-13       Impact factor: 2.373

10.  The Net Reclassification Index (NRI): a Misleading Measure of Prediction Improvement Even with Independent Test Data Sets.

Authors:  Margaret S Pepe; Jing Fan; Ziding Feng; Thomas Gerds; Jorgen Hilden
Journal:  Stat Biosci       Date:  2014-08-23
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