Literature DB >> 22499256

Reconstructing the orientation distribution of actin filaments in the lamellipodium of migrating keratocytes from electron microscopy tomography data.

Julian Weichsel1, Edit Urban, J Victor Small, Ulrich S Schwarz.   

Abstract

Migration of motile cells on flat substrates is usually driven by the polymerization of a flat actin filament network. Theoretical models have made different predictions regarding the distribution of the filament orientation in the lamellipodium with respect to the direction of motion. Here we show how one can automatically reconstruct the orientation distribution of actin filaments in the lamellipodium of migrating keratocytes from electron microscopy tomography data. We use two different image analysis methods, an algorithm which explicitly extracts an abstract network representation and an analysis of the gray scale information based on the structure tensor. We show that the two approaches give similar results, both for simulated data and for electron microscopy tomography data from migrating keratocytes. For the lamellipodium at the leading edge of fast moving cells, we find an orientation distribution that is peaked at +35/-35 degrees. For the lamellipodium at the leading edge of slow moving cells as well as for the lamellipodium at the flanks of fast moving cells, one broad peak around 0 degree dominates the distribution.
Copyright © 2012 International Society for Advancement of Cytometry.

Entities:  

Mesh:

Year:  2012        PMID: 22499256     DOI: 10.1002/cyto.a.22050

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  14 in total

1.  The Actin Cytoskeleton as an Active Adaptive Material.

Authors:  Shiladitya Banerjee; Margaret L Gardel; Ulrich S Schwarz
Journal:  Annu Rev Condens Matter Phys       Date:  2019-12-06       Impact factor: 16.109

2.  Investigating the role of F-actin in human immunodeficiency virus assembly by live-cell microscopy.

Authors:  Sheikh Abdul Rahman; Peter Koch; Julian Weichsel; William J Godinez; Ulrich Schwarz; Karl Rohr; Don C Lamb; Hans-Georg Kräusslich; Barbara Müller
Journal:  J Virol       Date:  2014-04-30       Impact factor: 5.103

3.  Force Feedback Controls Motor Activity and Mechanical Properties of Self-Assembling Branched Actin Networks.

Authors:  Peter Bieling; Tai-De Li; Julian Weichsel; Ryan McGorty; Pamela Jreij; Bo Huang; Daniel A Fletcher; R Dyche Mullins
Journal:  Cell       Date:  2016-01-14       Impact factor: 41.582

4.  A validated software application to measure fiber organization in soft tissue.

Authors:  Erica E Morrill; Azamat N Tulepbergenov; Christina J Stender; Roshani Lamichhane; Raquel J Brown; Trevor J Lujan
Journal:  Biomech Model Mechanobiol       Date:  2016-03-05

Review 5.  Ultrastructure of protrusive actin filament arrays.

Authors:  Tatyana M Svitkina
Journal:  Curr Opin Cell Biol       Date:  2013-04-29       Impact factor: 8.382

6.  Geometrical and mechanical properties control actin filament organization.

Authors:  Gaëlle Letort; Antonio Z Politi; Hajer Ennomani; Manuel Théry; Francois Nedelec; Laurent Blanchoin
Journal:  PLoS Comput Biol       Date:  2015-05-27       Impact factor: 4.475

7.  A Robust Actin Filaments Image Analysis Framework.

Authors:  Mitchel Alioscha-Perez; Carine Benadiba; Katty Goossens; Sandor Kasas; Giovanni Dietler; Ronnie Willaert; Hichem Sahli
Journal:  PLoS Comput Biol       Date:  2016-08-23       Impact factor: 4.475

8.  The More the Tubular: Dynamic Bundling of Actin Filaments for Membrane Tube Formation.

Authors:  Julian Weichsel; Phillip L Geissler
Journal:  PLoS Comput Biol       Date:  2016-07-06       Impact factor: 4.475

9.  Optogenetic control of RhoA reveals zyxin-mediated elasticity of stress fibres.

Authors:  Patrick W Oakes; Elizabeth Wagner; Christoph A Brand; Dimitri Probst; Marco Linke; Ulrich S Schwarz; Michael Glotzer; Margaret L Gardel
Journal:  Nat Commun       Date:  2017-06-12       Impact factor: 14.919

10.  SOAX: a software for quantification of 3D biopolymer networks.

Authors:  Ting Xu; Dimitrios Vavylonis; Feng-Ching Tsai; Gijsje H Koenderink; Wei Nie; Eddy Yusuf; Jian-Qiu Wu; Xiaolei Huang
Journal:  Sci Rep       Date:  2015-03-13       Impact factor: 4.379

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