Literature DB >> 22498714

Building retinal connectomes.

Robert E Marc1, Bryan W Jones, J Scott Lauritzen, Carl B Watt, James R Anderson.   

Abstract

Understanding vertebrate vision depends on knowing, in part, the complete network graph of at least one representative retina. Acquiring such graphs is the business of synaptic connectomics, emerging as a practical technology due to improvements in electron imaging platform control, management software for large-scale datasets, and availability of data storage. The optimal strategy for building complete connectomes uses transmission electron imaging with 2 nm or better resolution, molecular tags for cell identification, open-access data volumes for navigation, and annotation with open-source tools to build 3D cell libraries, complete network diagrams and connectivity databases. The first forays into retinal connectomics have shown that even nominally well-studied cells have much richer connection graphs than expected.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22498714      PMCID: PMC3415605          DOI: 10.1016/j.conb.2012.03.011

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  46 in total

1.  Multicolor and electron microscopic imaging of connexin trafficking.

Authors:  Guido Gaietta; Thomas J Deerinck; Stephen R Adams; James Bouwer; Oded Tour; Dale W Laird; Gina E Sosinsky; Roger Y Tsien; Mark H Ellisman
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

2.  Rich-club organization of the human connectome.

Authors:  Martijn P van den Heuvel; Olaf Sporns
Journal:  J Neurosci       Date:  2011-11-02       Impact factor: 6.167

3.  Internet-enabled high-resolution brain mapping and virtual microscopy.

Authors:  Shawn Mikula; Issac Trotts; James M Stone; Edward G Jones
Journal:  Neuroimage       Date:  2007-01-16       Impact factor: 6.556

4.  Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.

Authors:  Graham Knott; Herschel Marchman; David Wall; Ben Lich
Journal:  J Neurosci       Date:  2008-03-19       Impact factor: 6.167

5.  Absence of spectrally specific lateral inputs to midget ganglion cells in primate retina.

Authors:  D J Calkins; P Sterling
Journal:  Nature       Date:  1996-06-13       Impact factor: 49.962

6.  Automatic mosaicking and volume assembly for high-throughput serial-section transmission electron microscopy.

Authors:  Tolga Tasdizen; Pavel Koshevoy; Bradley C Grimm; James R Anderson; Bryan W Jones; Carl B Watt; Ross T Whitaker; Robert E Marc
Journal:  J Neurosci Methods       Date:  2010-08-14       Impact factor: 2.390

7.  Seeing circuits assemble.

Authors:  Jeff W Lichtman; Stephen J Smith
Journal:  Neuron       Date:  2008-11-06       Impact factor: 17.173

8.  Exploring the retinal connectome.

Authors:  James R Anderson; Bryan W Jones; Carl B Watt; Margaret V Shaw; Jia-Hui Yang; David Demill; James S Lauritzen; Yanhua Lin; Kevin D Rapp; David Mastronarde; Pavel Koshevoy; Bradley Grimm; Tolga Tasdizen; Ross Whitaker; Robert E Marc
Journal:  Mol Vis       Date:  2011-02-03       Impact factor: 2.367

9.  Informatics and data mining tools and strategies for the human connectome project.

Authors:  Daniel S Marcus; John Harwell; Timothy Olsen; Michael Hodge; Matthew F Glasser; Fred Prior; Mark Jenkinson; Timothy Laumann; Sandra W Curtiss; David C Van Essen
Journal:  Front Neuroinform       Date:  2011-06-27       Impact factor: 4.081

10.  Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure.

Authors:  Winfried Denk; Heinz Horstmann
Journal:  PLoS Biol       Date:  2004-10-19       Impact factor: 8.029

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  11 in total

Review 1.  Retinal connectomics: towards complete, accurate networks.

Authors:  Robert E Marc; Bryan W Jones; Carl B Watt; James R Anderson; Crystal Sigulinsky; Scott Lauritzen
Journal:  Prog Retin Eye Res       Date:  2013-09-07       Impact factor: 21.198

2.  ON cone bipolar cell axonal synapses in the OFF inner plexiform layer of the rabbit retina.

Authors:  J Scott Lauritzen; James R Anderson; Bryan W Jones; Carl B Watt; Shoeb Mohammed; John V Hoang; Robert E Marc
Journal:  J Comp Neurol       Date:  2013-04-01       Impact factor: 3.215

Review 3.  Genetics of gene expression in CNS.

Authors:  Ashutosh K Pandey; Robert W Williams
Journal:  Int Rev Neurobiol       Date:  2014       Impact factor: 3.230

Review 4.  Retinal remodeling in human retinitis pigmentosa.

Authors:  B W Jones; R L Pfeiffer; W D Ferrell; C B Watt; M Marmor; R E Marc
Journal:  Exp Eye Res       Date:  2016-03-26       Impact factor: 3.467

5.  A pathoconnectome of early neurodegeneration: Network changes in retinal degeneration.

Authors:  Rebecca L Pfeiffer; James R Anderson; Jeebika Dahal; Jessica C Garcia; Jia-Hui Yang; Crystal L Sigulinsky; Kevin Rapp; Daniel P Emrich; Carl B Watt; Hope Ab Johnstun; Alexis R Houser; Robert E Marc; Bryan W Jones
Journal:  Exp Eye Res       Date:  2020-08-15       Impact factor: 3.467

6.  Synaptic Mechanisms Generating Orientation Selectivity in the ON Pathway of the Rabbit Retina.

Authors:  Sowmya Venkataramani; W Rowland Taylor
Journal:  J Neurosci       Date:  2016-03-16       Impact factor: 6.167

7.  Automated transmission-mode scanning electron microscopy (tSEM) for large volume analysis at nanoscale resolution.

Authors:  Masaaki Kuwajima; John M Mendenhall; Laurence F Lindsey; Kristen M Harris
Journal:  PLoS One       Date:  2013-03-26       Impact factor: 3.240

8.  A resource from 3D electron microscopy of hippocampal neuropil for user training and tool development.

Authors:  Kristen M Harris; Josef Spacek; Maria Elizabeth Bell; Patrick H Parker; Laurence F Lindsey; Alexander D Baden; Joshua T Vogelstein; Randal Burns
Journal:  Sci Data       Date:  2015-09-01       Impact factor: 6.444

Review 9.  Input clustering and the microscale structure of local circuits.

Authors:  William M DeBello; Thomas J McBride; Grant S Nichols; Katy E Pannoni; Daniel Sanculi; Douglas J Totten
Journal:  Front Neural Circuits       Date:  2014-09-12       Impact factor: 3.492

10.  Rod-cone crossover connectome of mammalian bipolar cells.

Authors:  J Scott Lauritzen; Crystal L Sigulinsky; James R Anderson; Michael Kalloniatis; Noah T Nelson; Daniel P Emrich; Christopher Rapp; Nicholas McCarthy; Ethan Kerzner; Miriah Meyer; Bryan W Jones; Robert E Marc
Journal:  J Comp Neurol       Date:  2016-08-23       Impact factor: 3.215

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