Literature DB >> 22498241

Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells.

Daniel Hebenstreit1, Andrew Deonarine, M Madan Babu, Sarah A Teichmann.   

Abstract

CD4+ T cells play key roles in orchestrating adaptive immune responses, and are a popular model for mammalian cell differentiation. While immune regulation would seem to require exactly adjusted mRNA and protein expression levels of key factors, there is little evidence that this is strictly the case. Stochastic gene expression and plasticity of cell types contrast the apparent need for precision. Recent work has provided insight into the magnitude of molecular noise, as well as the relationship between noise, transcriptional circuits and epigenetic modifications in a variety of cell types. These processes and their interplay will also govern gene expression patterns in the different CD4+ cell types, and the determination of their cellular fates.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22498241     DOI: 10.1016/j.ceb.2012.03.007

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  7 in total

1.  System wide analyses have underestimated protein abundances and the importance of transcription in mammals.

Authors:  Jingyi Jessica Li; Peter J Bickel; Mark D Biggin
Journal:  PeerJ       Date:  2014-02-27       Impact factor: 2.984

2.  The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts.

Authors:  Arlie J Rinaldi; Paul E Lund; Mario R Blanco; Nils G Walter
Journal:  Nat Commun       Date:  2016-01-19       Impact factor: 14.919

3.  Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression.

Authors:  Gozde Kar; Jong Kyoung Kim; Aleksandra A Kolodziejczyk; Kedar Nath Natarajan; Elena Torlai Triglia; Borbala Mifsud; Sarah Elderkin; John C Marioni; Ana Pombo; Sarah A Teichmann
Journal:  Nat Commun       Date:  2017-06-26       Impact factor: 14.919

Review 4.  Interplay between gene expression noise and regulatory network architecture.

Authors:  Guilhem Chalancon; Charles N J Ravarani; S Balaji; Alfonso Martinez-Arias; L Aravind; Raja Jothi; M Madan Babu
Journal:  Trends Genet       Date:  2012-02-25       Impact factor: 11.639

5.  Depletion of stromal cells expressing fibroblast activation protein-α from skeletal muscle and bone marrow results in cachexia and anemia.

Authors:  Edward W Roberts; Andrew Deonarine; James O Jones; Alice E Denton; Christine Feig; Scott K Lyons; Marion Espeli; Matthew Kraman; Brendan McKenna; Richard J B Wells; Qi Zhao; Otavia L Caballero; Rachel Larder; Anthony P Coll; Stephen O'Rahilly; Kevin M Brindle; Sarah A Teichmann; David A Tuveson; Douglas T Fearon
Journal:  J Exp Med       Date:  2013-05-27       Impact factor: 14.307

6.  Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis.

Authors:  Bidesh Mahata; Xiuwei Zhang; Aleksandra A Kolodziejczyk; Valentina Proserpio; Liora Haim-Vilmovsky; Angela E Taylor; Daniel Hebenstreit; Felix A Dingler; Victoria Moignard; Berthold Göttgens; Wiebke Arlt; Andrew N J McKenzie; Sarah A Teichmann
Journal:  Cell Rep       Date:  2014-05-10       Impact factor: 9.423

7.  Single neurons needed for brain asymmetry studies.

Authors:  Athina Samara
Journal:  Front Genet       Date:  2014-01-16       Impact factor: 4.599

  7 in total

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