Literature DB >> 22496164

TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma.

David W Scott1, Karen L Mungall, Susana Ben-Neriah, Sanja Rogic, Ryan D Morin, Graham W Slack, King L Tan, Fong Chun Chan, Raymond S Lim, Joseph M Connors, Marco A Marra, Andrew J Mungall, Christian Steidl, Randy D Gascoyne.   

Abstract

Recently, the landscape of single base mutations in diffuse large B-cell lymphoma (DLBCL) was described. Here we report the discovery of a gene fusion between TBL1XR1 and TP63, the only recurrent somatic novel gene fusion identified in our analysis of transcriptome data from 96 DLBCL cases. Based on this cohort and a further 157 DLBCL cases analyzed by FISH, the incidence in de novo germinal center B cell-like (GCB) DLBCL is 5% (6 of 115). The fusion appears exclusive to GCB and was not seen in 138 non-GCB cases examined (P = .008, Fisher exact test) but was present at low incidence in follicular lymphoma (1 of 81). In all 7 cases identified, the 3' end of the fusion consists of exons 4 and onwards of TP63. The recurrence, subtype enrichment, and the remarkably conserved nature of the TP63 portion of the fusion suggest an important functional role in the lymphomas that harbor this event.

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Year:  2012        PMID: 22496164      PMCID: PMC3367896          DOI: 10.1182/blood-2012-02-414441

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  24 in total

Review 1.  Cellular origin of human B-cell lymphomas.

Authors:  R Küppers; U Klein; M L Hansmann; K Rajewsky
Journal:  N Engl J Med       Date:  1999-11-11       Impact factor: 91.245

2.  Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1.

Authors:  Ho-Geun Yoon; Doug W Chan; Zhi-Qing Huang; Jiwen Li; Joseph D Fondell; Jun Qin; Jiemin Wong
Journal:  EMBO J       Date:  2003-03-17       Impact factor: 11.598

3.  Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing.

Authors:  Jens G Lohr; Petar Stojanov; Michael S Lawrence; Daniel Auclair; Bjoern Chapuy; Carrie Sougnez; Peter Cruz-Gordillo; Birgit Knoechel; Yan W Asmann; Susan L Slager; Anne J Novak; Ahmet Dogan; Stephen M Ansell; Brian K Link; Lihua Zou; Joshua Gould; Gordon Saksena; Nicolas Stransky; Claudia Rangel-Escareño; Juan Carlos Fernandez-Lopez; Alfredo Hidalgo-Miranda; Jorge Melendez-Zajgla; Enrique Hernández-Lemus; Angela Schwarz-Cruz y Celis; Ivan Imaz-Rosshandler; Akinyemi I Ojesina; Joonil Jung; Chandra S Pedamallu; Eric S Lander; Thomas M Habermann; James R Cerhan; Margaret A Shipp; Gad Getz; Todd R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-17       Impact factor: 11.205

4.  Primary central nervous system lymphomas: a validation study of array-based comparative genomic hybridization in formalin-fixed paraffin-embedded tumor specimens.

Authors:  Esteban Braggio; Ellen Remstein McPhail; William Macon; M Beatriz Lopes; David Schiff; Mark Law; Stephanie Fink; Debra Sprau; Caterina Giannini; Ahmet Dogan; Rafael Fonseca; Brian Patrick O'Neill
Journal:  Clin Cancer Res       Date:  2011-05-11       Impact factor: 12.531

5.  Mutation of the p51/p63 gene is associated with blastic crisis in chronic myelogenous leukemia.

Authors:  H Yamaguchi; K Inokuchi; Y Sakuma; K Dan
Journal:  Leukemia       Date:  2001-11       Impact factor: 11.528

6.  Frequent gain of the p40/p51/p63 gene locus in primary head and neck squamous cell carcinoma.

Authors:  K Yamaguchi; L Wu; O L Caballero; K Hibi; B Trink; V Resto; P Cairns; K Okami; W M Koch; D Sidransky; J Jen
Journal:  Int J Cancer       Date:  2000-06-01       Impact factor: 7.396

7.  p63alpha and DeltaNp63alpha can induce cell cycle arrest and apoptosis and differentially regulate p53 target genes.

Authors:  M Dohn; S Zhang; X Chen
Journal:  Oncogene       Date:  2001-05-31       Impact factor: 9.867

8.  High level expression of deltaN-p63: a mechanism for the inactivation of p53 in undifferentiated nasopharyngeal carcinoma (NPC)?

Authors:  T Crook; J M Nicholls; L Brooks; J O'Nions; M J Allday
Journal:  Oncogene       Date:  2000-07-13       Impact factor: 9.867

9.  Analysis of the coding genome of diffuse large B-cell lymphoma.

Authors:  Laura Pasqualucci; Vladimir Trifonov; Giulia Fabbri; Jing Ma; Davide Rossi; Annalisa Chiarenza; Victoria A Wells; Adina Grunn; Monica Messina; Oliver Elliot; Joseph Chan; Govind Bhagat; Amy Chadburn; Gianluca Gaidano; Charles G Mullighan; Raul Rabadan; Riccardo Dalla-Favera
Journal:  Nat Genet       Date:  2011-07-31       Impact factor: 38.330

10.  Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Authors:  Ryan D Morin; Maria Mendez-Lago; Andrew J Mungall; Rodrigo Goya; Karen L Mungall; Richard D Corbett; Nathalie A Johnson; Tesa M Severson; Readman Chiu; Matthew Field; Shaun Jackman; Martin Krzywinski; David W Scott; Diane L Trinh; Jessica Tamura-Wells; Sa Li; Marlo R Firme; Sanja Rogic; Malachi Griffith; Susanna Chan; Oleksandr Yakovenko; Irmtraud M Meyer; Eric Y Zhao; Duane Smailus; Michelle Moksa; Suganthi Chittaranjan; Lisa Rimsza; Angela Brooks-Wilson; John J Spinelli; Susana Ben-Neriah; Barbara Meissner; Bruce Woolcock; Merrill Boyle; Helen McDonald; Angela Tam; Yongjun Zhao; Allen Delaney; Thomas Zeng; Kane Tse; Yaron Butterfield; Inanç Birol; Rob Holt; Jacqueline Schein; Douglas E Horsman; Richard Moore; Steven J M Jones; Joseph M Connors; Martin Hirst; Randy D Gascoyne; Marco A Marra
Journal:  Nature       Date:  2011-07-27       Impact factor: 49.962

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  26 in total

Review 1.  Challenges and implications of genomics for T-cell lymphomas.

Authors:  Eric D Jacobsen; David M Weinstock
Journal:  Hematology Am Soc Hematol Educ Program       Date:  2018-11-30

2.  Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing.

Authors:  Ryan D Morin; Karen Mungall; Erin Pleasance; Andrew J Mungall; Rodrigo Goya; Ryan D Huff; David W Scott; Jiarui Ding; Andrew Roth; Readman Chiu; Richard D Corbett; Fong Chun Chan; Maria Mendez-Lago; Diane L Trinh; Madison Bolger-Munro; Greg Taylor; Alireza Hadj Khodabakhshi; Susana Ben-Neriah; Julia Pon; Barbara Meissner; Bruce Woolcock; Noushin Farnoud; Sanja Rogic; Emilia L Lim; Nathalie A Johnson; Sohrab Shah; Steven Jones; Christian Steidl; Robert Holt; Inanc Birol; Richard Moore; Joseph M Connors; Randy D Gascoyne; Marco A Marra
Journal:  Blood       Date:  2013-05-22       Impact factor: 22.113

3.  Expression of p63 protein in anaplastic large cell lymphoma: implications for genetic subtyping.

Authors:  Xueju Wang; Rebecca L Boddicker; Surendra Dasari; Jagmohan S Sidhu; Marshall E Kadin; William R Macon; Stephen M Ansell; Rhett P Ketterling; Karen L Rech; Andrew L Feldman
Journal:  Hum Pathol       Date:  2017-01-30       Impact factor: 3.466

4.  Fluorescence in-situ hybridisation for TP63 rearrangements in T cell lymphomas: single-site experience of 470 patients and implications for clinical testing.

Authors:  Jess F Peterson; Kathryn E Pearce; Reid G Meyer; Patricia T Greipp; Ryan A Knudson; Linda B Baughn; Rhett P Ketterling; Andrew L Feldman
Journal:  Histopathology       Date:  2020-01-17       Impact factor: 5.087

Review 5.  Germinal centres and B cell lymphomagenesis.

Authors:  Katia Basso; Riccardo Dalla-Favera
Journal:  Nat Rev Immunol       Date:  2015-03       Impact factor: 53.106

Review 6.  TBL1XR1 in physiological and pathological states.

Authors:  Jian Yi Li; Garrett Daniels; Jing Wang; Xinmin Zhang
Journal:  Am J Clin Exp Urol       Date:  2015-04-25

Review 7.  Next-generation sequencing in the clinic: promises and challenges.

Authors:  Jiekun Xuan; Ying Yu; Tao Qing; Lei Guo; Leming Shi
Journal:  Cancer Lett       Date:  2012-11-19       Impact factor: 8.679

8.  GRM1 is upregulated through gene fusion and promoter swapping in chondromyxoid fibroma.

Authors:  Karolin H Nord; Henrik Lilljebjörn; Francesco Vezzi; Jenny Nilsson; Linda Magnusson; Johnbosco Tayebwa; Danielle de Jong; Judith V M G Bovée; Pancras C W Hogendoorn; Karoly Szuhai
Journal:  Nat Genet       Date:  2014-03-23       Impact factor: 38.330

9.  Chromosomal rearrangements and copy number abnormalities of TP63 correlate with p63 protein expression in lung adenocarcinoma.

Authors:  Marie-Christine Aubry; Anja Roden; Stephen J Murphy; George Vasmatzis; Sarah H Johnson; Faye R Harris; Geoffrey Halling; Ryan A Knudson; Rhett P Ketterling; Andrew L Feldman
Journal:  Mod Pathol       Date:  2014-09-05       Impact factor: 7.842

Review 10.  The genetic basis of diffuse large B-cell lymphoma.

Authors:  Laura Pasqualucci
Journal:  Curr Opin Hematol       Date:  2013-07       Impact factor: 3.284

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