| Literature DB >> 22493702 |
Lucia Valentínová1, Nicola L Beer, Juraj Staník, Nicholas D Tribble, Martijn van de Bunt, Miroslava Hučková, Amy Barrett, Iwar Klimeš, Daniela Gašperíková, Anna L Gloyn.
Abstract
Heterozygous glucokinase (GCK) mutations cause a subtype of maturity-onset diabetes of the young (GCK-MODY). Over 600 GCK mutations have been reported of which ∼65% are missense. In many cases co-segregation has not been established and despite the importance of functional studies in ascribing pathogenicity for missense variants these have only been performed for <10% of mutations. The aim of this study was to determine the minimum prevalence of GCK-MODY amongst diabetic subjects in Slovakia by sequencing GCK in 100 Slovakian probands with a phenotype consistent with GCK-MODY and to explore the pathogenicity of identified variants through family and functional studies. Twenty-two mutations were identified in 36 families (17 missense) of which 7 (I110N, V200A, N204D, G258R, F419S, c.580-2A>C, c.1113-1114delGC) were novel. Parental DNA was available for 22 probands (covering 14/22 mutations) and co-segregation established in all cases. Bioinformatic analysis predicted all missense mutations to be damaging. Nine (I110N, V200A, N204D, G223S, G258R, F419S, V244G, L315H, I436N) mutations were functionally evaluated. Basic kinetic analysis explained pathogenicity for 7 mutants which showed reduced glucokinase activity with relative activity indices (RAI) between 0.6 to <0.001 compared to wild-type GCK (1.0). For the remaining 2 mutants additional molecular mechanisms were investigated. Differences in glucokinase regulatory protein (GKRP) -mediated-inhibition of GCK were observed for both L315H & I436N when compared to wild type (IC(50) 14.6±0.1 mM & 20.3±1.6 mM vs.13.3±0.1 mM respectively [p<0.03]). Protein instability as assessed by thermal lability studies demonstrated that both L315H and I436N show marked thermal instability compared to wild-type GCK (RAI at 55°C 8.8±0.8% & 3.1±0.4% vs. 42.5±3.9% respectively [p<0.001]). The minimum prevalence of GCK-MODY amongst Slovakian patients with diabetes was 0.03%. In conclusion, we have identified 22 GCK mutations in 36 Slovakian probands and demonstrate that combining family, bioinformatic and functional studies can aid the interpretation of variants identified by molecular diagnostic screening.Entities:
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Year: 2012 PMID: 22493702 PMCID: PMC3321013 DOI: 10.1371/journal.pone.0034541
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
GCK mutations identified in Slovakian probands with a phenotype of GCK-MODY.
| Region | Abbreviated protein nomenclature | Nucleotide nomenclature | Number of probands with mutation | Reported functional studies | References |
| Islet promoter | - | c.−71G>C | 9 | Y |
|
| exon 2 | R36W | c.106C>T | 1 | Y |
|
| exon 2 | R43H | c.128G>A | 1 | N |
|
| exon 3 | G72R | c.214G>A | 1 | Y |
|
| exon 3 | I110N | c.329T>A | 1 | - | Novel |
| exon 4 | F150del | c.449–451delTCT | 1 | N |
|
| exon 4 | S151del | c.451–453delTCC | 1 | N |
|
| exon 5 | A188T | c.562G>A | 1 | Y |
|
| intron 5 | - | c.580 -2A>C | 1 | - | Novel |
| exon 6 | V200A | c.599C>T | 1 | - | Novel |
| exon 6 | N204D | c.610A>G | 1 | - | Novel |
| exon 6 | T206P | c.616A>C | 1 | N |
|
| exon 6 | G223S | c.667G>A | 1 | N |
|
| exon 7 | T228M | c.683C>T | 1 | N |
|
| exon 7 | V244G | c.731T>G | 2 | N |
|
| exon 7 | M251I | c.752T>G | 1 | N |
|
| exon 7 | G258R | c.772G>C | 2 | - | Novel |
| exon 8 | L315H | c.944T>A | 2 | N |
|
| exon 8 | G318R | c.352G>A | 3 | N |
|
| exon 9 | A370fs | c.1113–1114delCG | 1 | - | Novel |
| exon 10 | F419S | c.1256T>C | 1 | - | Novel |
| exon 10 | I436N | c.1307A>T | 2 | N |
|
All sequence information is based on GenBank reference sequence NM_000162.3. Nucleotide numbering reflects cDNA position, with +1 corresponding to the A of the major start codon of exon 1a (present in the pancreatic isoform). Y = yes, N = no.
Clinical and biochemical parameters of Slovakian GCK mutation carriers.
| Probands with | Family members with | ||
|
|
|
| |
|
| 11.0 (4–45) | 26.5 (5–81) | 40 |
|
| 16.5 (4–47) | 35.0 (1–86) | 72 |
|
| 19.6 (14.3–29.3) | 23.4 (15.2–47.4) | 44 |
|
| 6.4 (5.1–7.7) | 6.5 (5.0–9.7) | 16 |
|
| 6.9 (5.5–9.8) | 7.0 (5.2–11.8) | 65 |
|
| 4.1 (3.0–5.9) | 4.5 (3.0–7.3) | 64 |
|
| 0.8 (0.3–2.4) | 0.9 (0.2–10.0) | 64 |
|
| 1.2 (0.5–2.0) | 1.1 (0.6–2.1) | 64 |
|
| 42 | ||
|
| 19.4 | 11.9 | |
|
| 16.7 | 23.8 | |
|
| 52.8 | 42.9 | |
|
| 11.1 | 21.4 | |
|
| 42 | ||
|
| 2.8 | 2.4 | |
|
| 5.5 | 14.3 | |
|
| 80.6 | 61.9 | |
|
| 11.1 | 21.4 | |
Data are presented as median values (range).
Data only available for 35 probands.
Data only available for 33 probands.
For the remaining 32 subjects, diabetes/impaired glucose tolerance was not detected prior to genetic testing.
BMI = body mass index, HbA1c = glycated hemoglobin A1c, HDL = High Density Lipoprotein, OHA = oral hypoglyceamic agents.
Kinetic characterisation of GCK-MODY mutations.
| GCK-GST | S0.5 [mmol/L] | Hill number | ATPKm [mmol/L] | Kcat S0.5 [s−1] | Relative Activity Index (RAI) |
| WT | 7.69±0.10 | 1.67±0.01 | 0.44±0.01 | 65.78±0.84 | 1 |
| I110N | 14.87±0.25 | 1.37±0.03 | 0.03±<0.01 | 3.07±0.04 | 0.02 |
| V200A** | 78.3±0.97 | 1.28±0.01 | 0.69±0.07 | 56.85±0.81 | 0.01 |
| N204D | NO | NO | 5.42±0.10 | NO | NO |
| V244G* | 12.77±0.33 | 1.52±0.02 | 0.4±0.01 | 75.71±1.36 | 0.43 |
| G258R | NO | NO | NO | NO | NO |
| G223S | 16.5±0.16 | 1.46±0.02 | 0.47±0.01 | 74.45±1.63 | 0.25 |
| L315H | 8.09±0.06 | 1.67±0.01 | 0.50±0.01 | 69.21±0.63 | 0.89 |
| F419S# | 161.50±1.64 | 1.12±0.01 | 6.14±0.23 | 82.10±0.80 | <0.01 |
| I436N | 7.84±0.25 | 1.66±0.02 | 0.50±0.03 | 73.77±0.73 | 1.07 |
Data are given as mean ±SEM measured in n≥12 experiments. GCK-GST enzymes were prepared as 3 (WT)/2 (G258R)/1 (others) independent protein expressions. Glucose S0.5 values were normally measured in the glucose range 0–100 mmol/L with 5 mmol/L ATP, however for some mutant enzymes the glucose range was increased to 0–300 mmol/L (*), 0–600 mmol/L (**), or 0–1000 mmol/L with 25 mmol/L ATP (#).
NO = data not obtainable due to the severity of the kinetic inactivation which prevented the data from reaching a plateau even with a 10-fold increase in glucose concentration.
Figure 1Inhibition of wild type, I436N and L315H glucokinase proteins by human GKRP.
Data are shown as mean ±SEM, and were obtained from 4 independent measurements. Independent t-tests were used to ascertain differences between GKRP-mediated inhibition of both mutants versus that obtained with the wild-type GCK enzyme.
Figure 2Assessment of thermostability for GCK-GST mutant proteins.
Proteins were incubated for 30 minutes over a range of temperatures (40–60°C). Given data are means ±SEM, and were obtained from 6 independent measurements. The previously reported thermal instability mutant E300K [31](pink) was used as a positive control. The level of significance at each temperature point (mutants versus wild-type GCK activity) was calculated using an independent t-test.