Literature DB >> 22493204

Complete genome sequence of a thermophilic methanogen, Methanocella conradii HZ254, isolated from Chinese rice field soil.

Zhe Lü1, Yahai Lu.   

Abstract

Members of the order Methanocellales play a key role in methane emissions in paddy fields. Because of their slow growth and fastidious culture conditions, pure cultures are difficult to isolate and have been unavailable until recently. Here we report the complete genome sequence of a novel isolate in this group, Methanocella conradii strain HZ254.

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Year:  2012        PMID： 22493204      PMCID： PMC3347084          DOI： 10.1128/JB.00207-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  19 in total

1.  Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions.

Authors:  Roey Angel; Peter Claus; Ralf Conrad
Journal:  ISME J       Date:  2011-11-10       Impact factor: 10.302

2.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Authors:  Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos C Kyrpides
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

3.  Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I.

Authors:  Sanae Sakai; Hiroyuki Imachi; Yuji Sekiguchi; Akiyoshi Ohashi; Hideki Harada; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2007-05-04       Impact factor: 4.792

4.  Cultivation of methanogens under low-hydrogen conditions by using the coculture method.

Authors:  Sanae Sakai; Hiroyuki Imachi; Yuji Sekiguchi; I-Cheng Tseng; Akiyoshi Ohashi; Hideki Harada; Yoichi Kamagata
Journal:  Appl Environ Microbiol       Date:  2009-05-22       Impact factor: 4.792

5.  Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.

Authors:  Christoph Erkel; Michael Kube; Richard Reinhardt; Werner Liesack
Journal:  Science       Date:  2006-07-21       Impact factor: 47.728

6.  Detecting active methanogenic populations on rice roots using stable isotope probing.

Authors:  Yahai Lu; Tillmann Lueders; Michael W Friedrich; Ralf Conrad
Journal:  Environ Microbiol       Date:  2005-03       Impact factor: 5.491

7.  Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms

Authors: 
Journal:  Appl Environ Microbiol       Date:  1998-12       Impact factor: 4.792

8.  Transcriptional response of methanogen mcrA genes to oxygen exposure of rice field soil.

Authors:  Yanli Yuan; Ralf Conrad; Yahai Lu
Journal:  Environ Microbiol Rep       Date:  2011-01-05       Impact factor: 3.541

9.  Responses of methanogenic archaeal community to oxygen exposure in rice field soil.

Authors:  Yanli Yuan; Ralf Conrad; Yahai Lu
Journal:  Environ Microbiol Rep       Date:  2009-06-09       Impact factor: 3.541

10.  Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen.

Authors:  Roey Angel; Diethart Matthies; Ralf Conrad
Journal:  PLoS One       Date:  2011-05-31       Impact factor: 3.240
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  8 in total

1.  Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon.

Authors:  Jeong Ho Jeon; Jae Kyu Lim; Min-Sik Kim; Tae-Jun Yang; Seong-Hyuk Lee; Seung Seob Bae; Yun Jae Kim; Sang Hee Lee; Jung-Hyun Lee; Sung Gyun Kang; Hyun Sook Lee
Journal:  Extremophiles       Date:  2014-08-21       Impact factor: 2.395

2.  MiSeq HV4 16S rRNA gene analysis of bacterial community composition among the cave sediments of Indo-Burma biodiversity hotspot.

Authors:  Surajit De Mandal; Amrita Kumari Panda; Satpal Singh Bisht; Nachimuthu Senthil Kumar
Journal:  Environ Sci Pollut Res Int       Date:  2016-03-14       Impact factor: 4.223

3.  Response of a rice paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses.

Authors:  Pengfei Liu; Yanxiang Yang; Zhe Lü; Yahai Lu
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

4.  Methanocella conradii sp. nov., a thermophilic, obligate hydrogenotrophic methanogen, isolated from Chinese rice field soil.

Authors:  Zhe Lü; Yahai Lu
Journal:  PLoS One       Date:  2012-04-17       Impact factor: 3.240

5.  Short-Term Exposure of Paddy Soil Microbial Communities to Salt Stress Triggers Different Transcriptional Responses of Key Taxonomic Groups.

Authors:  Jingjing Peng; Carl-Eric Wegner; Werner Liesack
Journal:  Front Microbiol       Date:  2017-03-28       Impact factor: 5.640

6.  Identification of methanogenic archaea in the hyporheic sediment of Sitka stream.

Authors:  Iva Buriánková; Lenka Brablcová; Václav Mach; Petr Dvořák; Prem Prashant Chaudhary; Martin Rulík
Journal:  PLoS One       Date:  2013-11-20       Impact factor: 3.240

7.  Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.

Authors:  I-Min A Chen; Victor M Markowitz; Krishna Palaniappan; Ernest Szeto; Ken Chu; Jinghua Huang; Anna Ratner; Manoj Pillay; Michalis Hadjithomas; Marcel Huntemann; Natalia Mikhailova; Galina Ovchinnikova; Natalia N Ivanova; Nikos C Kyrpides
Journal:  BMC Genomics       Date:  2016-04-26       Impact factor: 3.969

8.  Comparisons of diazotrophic communities in native and agricultural desert ecosystems reveal plants as important drivers in diversity.

Authors:  Martina Köberl; Armin Erlacher; Elshahat M Ramadan; Tarek F El-Arabi; Henry Müller; Anastasia Bragina; Gabriele Berg
Journal:  FEMS Microbiol Ecol       Date:  2015-12-23       Impact factor: 4.194
  8 in total

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