Literature DB >> 22493193

Whole-genome sequences of Bacillus subtilis and close relatives.

Ashlee M Earl1, Mark Eppinger, W Florian Fricke, M J Rosovitz, David A Rasko, Sean Daugherty, Richard Losick, Roberto Kolter, Jacques Ravel.   

Abstract

We sequenced four strains of Bacillus subtilis and the type strains for two closely related species, Bacillus vallismortis and Bacillus mojavensis. We report the high-quality Sanger genome sequences of B. subtilis subspecies subtilis RO-NN-1 and AUSI98, B. subtilis subspecies spizizenii TU-B-10(T) and DV1-B-1, Bacillus mojavensis RO-H-1(T), and Bacillus vallismortis DV1-F-3(T).

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Year:  2012        PMID： 22493193      PMCID： PMC3347079          DOI： 10.1128/JB.05675-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  17 in total

1.  Design of a compartmentalized shotgun assembler for the human genome.

Authors:  D H Huson; K Reinert; S A Kravitz; K A Remington; A L Delcher; I M Dew; M Flanigan; A L Halpern; Z Lai; C M Mobarry; G G Sutton; E W Myers
Journal:  Bioinformatics       Date:  2001       Impact factor: 6.937

2.  Bacillus vallismortis sp. nov., a close relative of Bacillus subtilis, isolated from soil in Death Valley, California.

Authors:  M S Roberts; L K Nakamura; F M Cohan
Journal:  Int J Syst Bacteriol       Date:  1996-04

3.  Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.

Authors:  Mark Eppinger; Boyke Bunk; Mitrick A Johns; Janaka N Edirisinghe; Kirthi K Kutumbaka; Sara S K Koenig; Heather Huot Creasy; M J Rosovitz; David R Riley; Sean Daugherty; Madeleine Martin; Liam D H Elbourne; Ian Paulsen; Rebekka Biedendieck; Christopher Braun; Scott Grayburn; Sourabh Dhingra; Vitaliy Lukyanchuk; Barbara Ball; Riaz Ul-Qamar; Jürgen Seibel; Erhard Bremer; Dieter Jahn; Jacques Ravel; Patricia S Vary
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

4.  Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov.

Authors:  L K Nakamura; M S Roberts; F M Cohan
Journal:  Int J Syst Bacteriol       Date:  1999-07

5.  The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Authors:  F Kunst; N Ogasawara; I Moszer; A M Albertini; G Alloni; V Azevedo; M G Bertero; P Bessières; A Bolotin; S Borchert; R Borriss; L Boursier; A Brans; M Braun; S C Brignell; S Bron; S Brouillet; C V Bruschi; B Caldwell; V Capuano; N M Carter; S K Choi; J J Cordani; I F Connerton; N J Cummings; R A Daniel; F Denziot; K M Devine; A Düsterhöft; S D Ehrlich; P T Emmerson; K D Entian; J Errington; C Fabret; E Ferrari; D Foulger; C Fritz; M Fujita; Y Fujita; S Fuma; A Galizzi; N Galleron; S Y Ghim; P Glaser; A Goffeau; E J Golightly; G Grandi; G Guiseppi; B J Guy; K Haga; J Haiech; C R Harwood; A Hènaut; H Hilbert; S Holsappel; S Hosono; M F Hullo; M Itaya; L Jones; B Joris; D Karamata; Y Kasahara; M Klaerr-Blanchard; C Klein; Y Kobayashi; P Koetter; G Koningstein; S Krogh; M Kumano; K Kurita; A Lapidus; S Lardinois; J Lauber; V Lazarevic; S M Lee; A Levine; H Liu; S Masuda; C Mauël; C Médigue; N Medina; R P Mellado; M Mizuno; D Moestl; S Nakai; M Noback; D Noone; M O'Reilly; K Ogawa; A Ogiwara; B Oudega; S H Park; V Parro; T M Pohl; D Portelle; S Porwollik; A M Prescott; E Presecan; P Pujic; B Purnelle; G Rapoport; M Rey; S Reynolds; M Rieger; C Rivolta; E Rocha; B Roche; M Rose; Y Sadaie; T Sato; E Scanlan; S Schleich; R Schroeter; F Scoffone; J Sekiguchi; A Sekowska; S J Seror; P Serror; B S Shin; B Soldo; A Sorokin; E Tacconi; T Takagi; H Takahashi; K Takemaru; M Takeuchi; A Tamakoshi; T Tanaka; P Terpstra; A Togoni; V Tosato; S Uchiyama; M Vandebol; F Vannier; A Vassarotti; A Viari; R Wambutt; H Wedler; T Weitzenegger; P Winters; A Wipat; H Yamamoto; K Yamane; K Yasumoto; K Yata; K Yoshida; H F Yoshikawa; E Zumstein; H Yoshikawa; A Danchin
Journal:  Nature       Date:  1997-11-20       Impact factor: 49.962

6.  Bacillus mojavensis sp. nov., distinguishable from Bacillus subtilis by sexual isolation, divergence in DNA sequence, and differences in fatty acid composition.

Authors:  M S Roberts; L K Nakamura; F M Cohan
Journal:  Int J Syst Bacteriol       Date:  1994-04

Review 7.  Ecology and genomics of Bacillus subtilis.

Authors:  Ashlee M Earl; Richard Losick; Roberto Kolter
Journal:  Trends Microbiol       Date:  2008-05-28       Impact factor: 17.079

8.  Visualization of comparative genomic analyses by BLAST score ratio.

Authors:  David A Rasko; Garry S A Myers; Jacques Ravel
Journal:  BMC Bioinformatics       Date:  2005-01-05       Impact factor: 3.169

9.  High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies.

Authors:  Anjana Srivatsan; Yi Han; Jianlan Peng; Ashley K Tehranchi; Richard Gibbs; Jue D Wang; Rui Chen
Journal:  PLoS Genet       Date:  2008-08-01       Impact factor: 5.917

10.  From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

Authors:  Valérie Barbe; Stéphane Cruveiller; Frank Kunst; Patricia Lenoble; Guillaume Meurice; Agnieszka Sekowska; David Vallenet; Tingzhang Wang; Ivan Moszer; Claudine Médigue; Antoine Danchin
Journal:  Microbiology (Reading)       Date:  2009-04-21       Impact factor: 2.777
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  22 in total

1.  Variable genetic architectures produce virtually identical molecules in bacterial symbionts of fungus-growing ants.

Authors:  Clarissa S Sit; Antonio C Ruzzini; Ethan B Van Arnam; Timothy R Ramadhar; Cameron R Currie; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

2.  Salt-sensitivity of σ(H) and Spo0A prevents sporulation of Bacillus subtilis at high osmolarity avoiding death during cellular differentiation.

Authors:  Nils Widderich; Christopher D A Rodrigues; Fabian M Commichau; Kathleen E Fischer; Fernando H Ramirez-Guadiana; David Z Rudner; Erhard Bremer
Journal:  Mol Microbiol       Date:  2016-01-18       Impact factor: 3.501

3.  Expression, purification, and biochemical properties of arginase from Bacillus subtilis 168.

Authors:  Jin-Ju Yu; Ki-Bum Park; Su-Gon Kim; Suk-Heung Oh
Journal:  J Microbiol       Date:  2013-04-27       Impact factor: 3.422

4.  Identification of ypqP as a New Bacillus subtilis biofilm determinant that mediates the protection of Staphylococcus aureus against antimicrobial agents in mixed-species communities.

Authors:  Pilar Sanchez-Vizuete; Dominique Le Coq; Arnaud Bridier; Jean-Marie Herry; Stéphane Aymerich; Romain Briandet
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

Review 5.  Approaches to Understanding Mechanisms of Dentilisin Protease Complex Expression in Treponema denticola.

Authors:  M Paula Goetting-Minesky; Valentina Godovikova; J Christopher Fenno
Journal:  Front Cell Infect Microbiol       Date:  2021-05-18       Impact factor: 6.073

6.  An alternate route to phosphorylating DegU of Bacillus subtilis using acetyl phosphate.

Authors:  Lynne S Cairns; Jessica E Martyn; Keith Bromley; Nicola R Stanley-Wall
Journal:  BMC Microbiol       Date:  2015-03-31       Impact factor: 3.605

7.  A mechanical signal transmitted by the flagellum controls signalling in Bacillus subtilis.

Authors:  Lynne S Cairns; Victoria L Marlow; Emma Bissett; Adam Ostrowski; Nicola R Stanley-Wall
Journal:  Mol Microbiol       Date:  2013-08-14       Impact factor: 3.501

8.  RnhP is a plasmid-borne RNase HI that contributes to genome maintenance in the ancestral strain Bacillus subtilis NCIB 3610.

Authors:  Taylor M Nye; Emma K McLean; Andrew M Burrage; Devon D Dennison; Daniel B Kearns; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2020-09-25       Impact factor: 3.501

9.  The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine.

Authors:  Isabelle Gaugué; Jacques Oberto; Harald Putzer; Jacqueline Plumbridge
Journal:  PLoS One       Date:  2013-05-08       Impact factor: 3.240

10.  Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination.

Authors:  Delyana P Vasileva; Jared C Streich; Leah H Burdick; Dawn M Klingeman; Hari B Chhetri; Christa M Brelsford; J Christopher Ellis; Dan M Close; Daniel A Jacobson; Joshua K Michener
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160
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