Literature DB >> 22493192

Sequence and annotation of Rickettsia sibirica sibirica genome.

Erwin Sentausa1, Khalid El Karkouri, Catherine Robert, Didier Raoult, Pierre-Edouard Fournier.   

Abstract

Rickettsia sibirica sibirica is the causative agent of Siberian or North Asian tick typhus, a tick-borne rickettsiosis known to exist in Siberia and eastern China. Here we present the draft genome of Rickettsia sibirica sibirica strain BJ-90 isolated from Dermacentor sinicus ticks collected in Beijing, China.

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Year:  2012        PMID： 22493192      PMCID： PMC3347044          DOI： 10.1128/JB.00150-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  AMIGene: Annotation of MIcrobial Genes.

Authors:  Stéphanie Bocs; Stéphane Cruveiller; David Vallenet; Grégory Nuel; Claudine Médigue
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica.

Authors:  Joel A Malek; Jamey M Wierzbowski; Wei Tao; Stephanie A Bosak; David J Saranga; Lynn Doucette-Stamm; Douglas R Smith; Paul J McEwan; Kevin J McKernan
Journal:  Nucleic Acids Res       Date:  2004-02-10       Impact factor: 16.971

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Genetic differentiation of Chinese isolates of Rickettsia sibirica by partial ompA gene sequencing and multispacer typing.

Authors:  LiJuan Zhang; JianLing Jin; XiuPing Fu; Didier Raoult; Pierre-Edouard Fournier
Journal:  J Clin Microbiol       Date:  2006-07       Impact factor: 5.948

6.  Genotypic and antigenic identification of two new strains of spotted fever group rickettsiae isolated from China.

Authors:  X Yu; Y Jin; M Fan; G Xu; Q Liu; D Raoult
Journal:  J Clin Microbiol       Date:  1993-01       Impact factor: 5.948

7.  OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Authors:  Li Li; Christian J Stoeckert; David S Roos
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

8.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

9.  Reductive genome evolution from the mother of Rickettsia.

Authors:  Guillaume Blanc; Hiroyuki Ogata; Catherine Robert; Stéphane Audic; Karsten Suhre; Guy Vestris; Jean-Michel Claverie; Didier Raoult
Journal:  PLoS Genet       Date:  2007-01-19       Impact factor: 5.917

10.  Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life.

Authors:  Joseph J Gillespie; Kelly Williams; Maulik Shukla; Eric E Snyder; Eric K Nordberg; Shane M Ceraul; Chitti Dharmanolla; Daphne Rainey; Jeetendra Soneja; Joshua M Shallom; Nataraj Dongre Vishnubhat; Rebecca Wattam; Anjan Purkayastha; Michael Czar; Oswald Crasta; Joao C Setubal; Abdu F Azad; Bruno S Sobral
Journal:  PLoS One       Date:  2008-04-16       Impact factor: 3.240
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