Literature DB >> 22491032

Enhancers: emerging roles in cell fate specification.

Chin-Tong Ong1, Victor G Corces.   

Abstract

Enhancers are regulatory DNA elements that dictate the spatial and temporal patterns of gene expression during development. Recent evidence suggests that the distinct chromatin features of enhancer regions provide the permissive landscape required for the differential access of diverse signalling molecules that drive cell-specific gene expression programmes. The epigenetic patterning of enhancers occurs before cell fate decisions, suggesting that the epigenetic information required for subsequent differentiation processes is embedded within the enhancer element. Lineage studies indicate that the patterning of enhancers might be regulated by the intricate interplay between DNA methylation status, the binding of specific transcription factors to enhancers and existing histone modifications. In this review, we present insights into the mechanisms of enhancer function, which might ultimately facilitate cell reprogramming strategies for use in regenerative medicine.

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Year:  2012        PMID: 22491032      PMCID: PMC3343362          DOI: 10.1038/embor.2012.52

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  84 in total

1.  Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

Authors:  R David Hawkins; Gary C Hon; Leonard K Lee; Queminh Ngo; Ryan Lister; Mattia Pelizzola; Lee E Edsall; Samantha Kuan; Ying Luu; Sarit Klugman; Jessica Antosiewicz-Bourget; Zhen Ye; Celso Espinoza; Saurabh Agarwahl; Li Shen; Victor Ruotti; Wei Wang; Ron Stewart; James A Thomson; Joseph R Ecker; Bing Ren
Journal:  Cell Stem Cell       Date:  2010-05-07       Impact factor: 24.633

2.  Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa.

Authors:  Urszula Brykczynska; Mizue Hisano; Serap Erkek; Liliana Ramos; Edward J Oakeley; Tim C Roloff; Christian Beisel; Dirk Schübeler; Michael B Stadler; Antoine H F M Peters
Journal:  Nat Struct Mol Biol       Date:  2010-05-16       Impact factor: 15.369

3.  Epigenetic priming of a pre-B cell-specific enhancer through binding of Sox2 and Foxd3 at the ESC stage.

Authors:  Daniel Liber; Renae Domaschenz; Per-Henrik Holmqvist; Luca Mazzarella; Andrew Georgiou; Marion Leleu; Amanda G Fisher; Patricia A Labosky; Niall Dillon
Journal:  Cell Stem Cell       Date:  2010-07-02       Impact factor: 24.633

4.  ChIP-Seq identification of weakly conserved heart enhancers.

Authors:  Matthew J Blow; David J McCulley; Zirong Li; Tao Zhang; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Feng Chen; Veena Afzal; James Bristow; Bing Ren; Brian L Black; Edward M Rubin; Axel Visel; Len A Pennacchio
Journal:  Nat Genet       Date:  2010-08-22       Impact factor: 38.330

5.  Chromatin signature of embryonic pluripotency is established during genome activation.

Authors:  Nadine L Vastenhouw; Yong Zhang; Ian G Woods; Farhad Imam; Aviv Regev; X Shirley Liu; John Rinn; Alexander F Schier
Journal:  Nature       Date:  2010-03-24       Impact factor: 49.962

6.  Transcriptional enhancers in animal development and evolution.

Authors:  Mike Levine
Journal:  Curr Biol       Date:  2010-09-14       Impact factor: 10.834

7.  Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.

Authors:  Sven Heinz; Christopher Benner; Nathanael Spann; Eric Bertolino; Yin C Lin; Peter Laslo; Jason X Cheng; Cornelis Murre; Harinder Singh; Christopher K Glass
Journal:  Mol Cell       Date:  2010-05-28       Impact factor: 17.970

8.  Relationship between nucleosome positioning and DNA methylation.

Authors:  Ramakrishna K Chodavarapu; Suhua Feng; Yana V Bernatavichute; Pao-Yang Chen; Hume Stroud; Yanchun Yu; Jonathan A Hetzel; Frank Kuo; Jin Kim; Shawn J Cokus; David Casero; Maria Bernal; Peter Huijser; Amander T Clark; Ute Krämer; Sabeeha S Merchant; Xiaoyu Zhang; Steven E Jacobsen; Matteo Pellegrini
Journal:  Nature       Date:  2010-05-30       Impact factor: 49.962

9.  CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

Authors:  John P Thomson; Peter J Skene; Jim Selfridge; Thomas Clouaire; Jacky Guy; Shaun Webb; Alastair R W Kerr; Aimée Deaton; Rob Andrews; Keith D James; Daniel J Turner; Robert Illingworth; Adrian Bird
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

10.  Widespread transcription at neuronal activity-regulated enhancers.

Authors:  Tae-Kyung Kim; Martin Hemberg; Jesse M Gray; Allen M Costa; Daniel M Bear; Jing Wu; David A Harmin; Mike Laptewicz; Kellie Barbara-Haley; Scott Kuersten; Eirene Markenscoff-Papadimitriou; Dietmar Kuhl; Haruhiko Bito; Paul F Worley; Gabriel Kreiman; Michael E Greenberg
Journal:  Nature       Date:  2010-04-14       Impact factor: 49.962

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  67 in total

Review 1.  Genetic and molecular alterations across medulloblastoma subgroups.

Authors:  Patryk Skowron; Vijay Ramaswamy; Michael D Taylor
Journal:  J Mol Med (Berl)       Date:  2015-09-09       Impact factor: 4.599

Review 2.  Super-Enhancer-Driven Transcriptional Dependencies in Cancer.

Authors:  Satyaki Sengupta; Rani E George
Journal:  Trends Cancer       Date:  2017-04-12

Review 3.  Human genetic variation within neural crest enhancers: molecular and phenotypic implications.

Authors:  Alvaro Rada-Iglesias; Sara L Prescott; Joanna Wysocka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-05-06       Impact factor: 6.237

4.  RNA transcribed from a distal enhancer is required for activating the chromatin at the promoter of the gonadotropin α-subunit gene.

Authors:  Lilach Pnueli; Sergei Rudnizky; Yahav Yosefzon; Philippa Melamed
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-25       Impact factor: 11.205

5.  Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals.

Authors:  Cesar Arenas-Mena; James A Coffman
Journal:  Dev Dyn       Date:  2015-08-04       Impact factor: 3.780

Review 6.  Dissecting Tissue-Specific Super-Enhancers by Integrating Genome-Wide Analyses and CRISPR/Cas9 Genome Editing.

Authors:  Kyung Hyun Yoo; Lothar Hennighausen; Ha Youn Shin
Journal:  J Mammary Gland Biol Neoplasia       Date:  2018-10-06       Impact factor: 2.673

Review 7.  STAT5-Driven Enhancers Tightly Control Temporal Expression of Mammary-Specific Genes.

Authors:  Ha Youn Shin; Lothar Hennighausen; Kyung Hyun Yoo
Journal:  J Mammary Gland Biol Neoplasia       Date:  2018-10-17       Impact factor: 2.673

8.  How has the study of the human placenta aided our understanding of partially methylated genes?

Authors:  Diane I Schroeder; Janine M LaSalle
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

Review 9.  Genetic and molecular control of osterix in skeletal formation.

Authors:  Krishna M Sinha; Xin Zhou
Journal:  J Cell Biochem       Date:  2013-05       Impact factor: 4.429

Review 10.  The structural and functional roles of CTCF in the regulation of cell type-specific and human disease-associated super-enhancers.

Authors:  Ha Youn Shin
Journal:  Genes Genomics       Date:  2018-11-19       Impact factor: 1.839

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