Literature DB >> 22489782

Enhanced crystallizability by protein engineering approaches: a general overview.

Alessia Ruggiero1, Giovanni Smaldone, Flavia Squeglia, Rita Berisio.   

Abstract

The limiting step in macromolecular crystallography is the preparation protein crystals suitable for X-ray diffraction studies. A strong prerequisite for the success of crystallization experiments is the ability to produce monodisperse and properly folded protein samples. Since the production of most protein is usually achieved using recombinant methods, it has become possible to engineer target proteins with increased propensities to form well diffracting crystals. Recent advances in bioinformatics, which takes advantage from an enhanced information in the protein databases, are of enormous help for the design of modified proteins. Based on bioinformatics analyses, the reduction of the structural complexity of proteins or their site-specific mutagenesis has proven to have a dramatic impact on both the yield of heterologous protein expression and its crystallizability. Therefore, protein engineering represents a valid tool which supports the classical crystallization screenings with a more rational approach. This review describes key methods of protein-engineering and provides a number of examples of their successful use in crystallization. Scope of proposed topic: This Topic is focused on state-of-art protein engineering techniques to increase the propensity of proteins to form crystals with suitable X-ray diffraction properties. Protein engineering methods have proven to be of great help for the crystallization of difficult targets. We herein review molecular biology and chemical methods to help protein crystallization.

Mesh:

Substances:

Year:  2012        PMID: 22489782     DOI: 10.2174/092986612800793172

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  9 in total

Review 1.  Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity.

Authors:  Huilin Wang; Liubin Feng; Geoffrey I Webb; Lukasz Kurgan; Jiangning Song; Donghai Lin
Journal:  Brief Bioinform       Date:  2018-09-28       Impact factor: 11.622

2.  Surface reengineering of RPA70N enables cocrystallization with an inhibitor of the replication protein A interaction motif of ATR interacting protein.

Authors:  Michael D Feldkamp; Andreas O Frank; J Phillip Kennedy; James D Patrone; Bhavatarini Vangamudi; Alex G Waterson; Stephen W Fesik; Walter J Chazin
Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

3.  Enhancing ubiquitin crystallization through surface-entropy reduction.

Authors:  Patrick J Loll; Peining Xu; John T Schmidt; Scott L Melideo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

4.  Nanobody-aided crystallization of the transcription regulator PaaR2 from Escherichia coli O157:H7.

Authors:  Pieter De Bruyn; Maruša Prolič-Kalinšek; Alexandra Vandervelde; Milan Malfait; Yann G J Sterckx; Frank Sobott; San Hadži; Els Pardon; Jan Steyaert; Remy Loris
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-09-21       Impact factor: 1.072

5.  Crysalis: an integrated server for computational analysis and design of protein crystallization.

Authors:  Huilin Wang; Liubin Feng; Ziding Zhang; Geoffrey I Webb; Donghai Lin; Jiangning Song
Journal:  Sci Rep       Date:  2016-02-24       Impact factor: 4.379

6.  Design of an expression system to enhance MBP-mediated crystallization.

Authors:  Tengchuan Jin; Watchalee Chuenchor; Jiansheng Jiang; Jinbo Cheng; Yajuan Li; Kang Fang; Mo Huang; Patrick Smith; Tsan Sam Xiao
Journal:  Sci Rep       Date:  2017-01-23       Impact factor: 4.379

7.  MBP-binding DARPins facilitate the crystallization of an MBP fusion protein.

Authors:  Rajesh Gumpena; George T Lountos; David S Waugh
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-08-29       Impact factor: 1.056

8.  The crystal structure of the orphan nuclear receptor NR2E3/PNR ligand binding domain reveals a dimeric auto-repressed conformation.

Authors:  M H Eileen Tan; X Edward Zhou; Fen-Fen Soon; Xiaodan Li; Jun Li; Eu-Leong Yong; Karsten Melcher; H Eric Xu
Journal:  PLoS One       Date:  2013-09-12       Impact factor: 3.240

Review 9.  Protein stability: a crystallographer's perspective.

Authors:  Marc C Deller; Leopold Kong; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-26       Impact factor: 1.056

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.