Literature DB >> 22487609

Quantifying circular-linear associations: hippocampal phase precession.

Richard Kempter1, Christian Leibold, György Buzsáki, Kamran Diba, Robert Schmidt.   

Abstract

When a rat crosses the place field of a hippocampal pyramidal cell, this cell typically fires a series of spikes. Spike phases, measured with respect to theta oscillations of the local field potential, on average decrease as a function of the spatial distance traveled. This relation between phase and position of spikes might be a neural basis for encoding and is called phase precession. The degree of association between the circular phase variable and the linear spatial variable is commonly quantified through, however, a linear-linear correlation coefficient where the circular variable is converted to a linear variable by restricting the phase to an arbitrarily chosen range, which may bias the estimated correlation. Here we introduce a new measure to quantify circular-linear associations. This measure leads to a robust estimate of the slope and phase offset of the regression line, and it provides a correlation coefficient for circular-linear data that is a natural analog of Pearson's product-moment correlation coefficient for linear-linear data. Using surrogate data, we show that the new method outperforms the standard linear-linear approach with respect to estimates of the regression line and the correlation, and that the new method is less dependent on noise and sample size. We confirm these findings in a large data set of experimental recordings from hippocampal place cells and theta oscillations, and we discuss remaining problems that are relevant for the analysis and interpretation of phase precession. In summary, we provide a new method for the quantification of circular-linear associations.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22487609     DOI: 10.1016/j.jneumeth.2012.03.007

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  61 in total

1.  Grid cells in rat entorhinal cortex encode physical space with independent firing fields and phase precession at the single-trial level.

Authors:  Eric T Reifenstein; Richard Kempter; Susanne Schreiber; Martin B Stemmler; Andreas V M Herz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Theta and Alpha Oscillations Are Traveling Waves in the Human Neocortex.

Authors:  Honghui Zhang; Andrew J Watrous; Ansh Patel; Joshua Jacobs
Journal:  Neuron       Date:  2018-06-07       Impact factor: 17.173

3.  The hippocampal code for space in Mongolian gerbils.

Authors:  Emily A Mankin; Kay Thurley; Alireza Chenani; Olivia V Haas; Luca Debs; Josephine Henke; Melissa Galinato; Jill K Leutgeb; Stefan Leutgeb; Christian Leibold
Journal:  Hippocampus       Date:  2019-02-12       Impact factor: 3.899

4.  Back to the future: preserved hippocampal network activity during reverse ambulation.

Authors:  Andrew P Maurer; Adam W Lester; Sara N Burke; Jonathan J Ferng; Carol A Barnes
Journal:  J Neurosci       Date:  2014-11-05       Impact factor: 6.167

5.  Place field expansion after focal MEC inactivations is consistent with loss of Fourier components and path integrator gain reduction.

Authors:  Jake Ormond; Bruce L McNaughton
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

6.  Coherent Coding of Spatial Position Mediated by Theta Oscillations in the Hippocampus and Prefrontal Cortex.

Authors:  Mark C Zielinski; Justin D Shin; Shantanu P Jadhav
Journal:  J Neurosci       Date:  2019-04-02       Impact factor: 6.167

7.  Hippocampal neural activity reflects the economy of choices during goal-directed navigation.

Authors:  Valerie L Tryon; Marsha R Penner; Shawn W Heide; Hunter O King; Joshua Larkin; Sheri J Y Mizumori
Journal:  Hippocampus       Date:  2017-03-17       Impact factor: 3.899

8.  Cellular mechanisms of spatial navigation in the medial entorhinal cortex.

Authors:  Christoph Schmidt-Hieber; Michael Häusser
Journal:  Nat Neurosci       Date:  2013-02-10       Impact factor: 24.884

9.  Medial Entorhinal Cortex Selectively Supports Temporal Coding by Hippocampal Neurons.

Authors:  Nick T M Robinson; James B Priestley; Jon W Rueckemann; Aaron D Garcia; Vittoria A Smeglin; Francesca A Marino; Howard Eichenbaum
Journal:  Neuron       Date:  2017-04-20       Impact factor: 17.173

10.  Phase coding by grid cells in unconstrained environments: two-dimensional phase precession.

Authors:  Jason R Climer; Ehren L Newman; Michael E Hasselmo
Journal:  Eur J Neurosci       Date:  2013-05-29       Impact factor: 3.386

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