Literature DB >> 22486543

On the accessibility to conical intersections in purines: hypoxanthine and its singly protonated and deprotonated forms.

Juan P Villabona-Monsalve1, Raquel Noria, Spiridoula Matsika, Jorge Peón.   

Abstract

The dynamics following electronic excitation of hypoxanthine and its nucleoside inosine were studied by femtosecond fluorescence up-conversion. Our objective was to explore variants of the purinic DNA bases in order to determine the molecular parameters that increase or reduce the accessibility to ground state conical intersections. From experiments in water and methanol solution we conclude that both dominant neutral tautomers of hypoxanthine exhibit ultrashort excited state lifetimes (τ < 0.2 ps), which are significantly shorter than in the related nucleobase guanine. This points to a more accessible conical intersection for the fluorescent state upon removal of the amino group, present in guanine but absent in hypoxanthine. The excited state dynamics of singly protonated hypoxanthine were also studied, showing biexponential decays with a 1.1 ps component (5%) besides a sub-0.2 ps ultrafast component. On the other hand, the S(1) lifetimes of the singly deprotonated forms of hypoxanthine and inosine show drastic differences, where the latter remains ultrafast but the singly deprotonated hypoxanthine shows a much longer lifetime of 19 ps. This significant variation is related to the different deprotonation sites in hypoxanthine versus inosine, which gives rise to significantly different resonance structures. In our study we also include multireference perturbation theory (MRMP2) excited state calculations in order to determine the nature of the initial electronic excitation in our experiments and clarify the ordering of the states in the singlet manifold at the ground state geometry. In addition, we performed multireference configuration interaction calculations (MR-CIS) that identify the presence of low-lying conical intersections for both prominent neutral tautomers of hypoxanthine. In both cases, the surface crossings occur at geometries reached by out of plane opposite motions of C2 and N3. The study of this simpler purine gives several insights into how small structural modifications, including amino substitution and protonation site and state, determine the accessibility to conical intersections in this kind of heterocycles.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22486543     DOI: 10.1021/ja300546x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  4 in total

1.  On the Origin of the Canonical Nucleobases: An Assessment of Selection Pressures across Chemical and Early Biological Evolution.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Isr J Chem       Date:  2013-06       Impact factor: 3.333

2.  Exploring the Influence of Intermolecular Interactions in Prebiotic Chemistry Using Laser Spectroscopy and Calculations.

Authors:  Ander Camiruaga; Imanol Usabiaga; Camilla Calabrese; Iker Lamas; Francisco J Basterretxea; José A Fernández
Journal:  Chemistry       Date:  2021-12-02       Impact factor: 5.020

3.  Ultrafast Electronic Deactivation Dynamics of Xanthosine Monophosphate.

Authors:  Katharina Röttger; Rebecca Stellmacher; Mayra C Stuhldreier; Friedrich Temps
Journal:  Molecules       Date:  2017-01-18       Impact factor: 4.411

4.  Electronic and structural elements that regulate the excited-state dynamics in purine nucleobase derivatives.

Authors:  Carlos E Crespo-Hernández; Lara Martínez-Fernández; Clemens Rauer; Christian Reichardt; Sebastian Mai; Marvin Pollum; Philipp Marquetand; Leticia González; Inés Corral
Journal:  J Am Chem Soc       Date:  2015-03-25       Impact factor: 15.419

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.