Literature DB >> 22484858

Importance of observation interval in two-dimensional video analysis of individual diatom cells.

Ayumu Murase1, Yosuke Kubota, Shunichiro Hori, Shigeyuki Hirayama, Shigeki Mayama, Kazuo Umemura.   

Abstract

The effect of the observation interval on two-dimensional trajectory analysis of motility of individual diatom cells of Navicula sp. was studied by comparing thinned-out observation data. The trajectory of cell movement was visualized accurately even after thinning the data interval. However, the analysis of velocity fluctuations of individual cells was found to be significantly affected by the data interval. Reproducibility of the results was guaranteed by analyzing many independent cells. In addition, comparison between automatic and manual determination of cell positions proved that automatic determination was a reliable process. Our data indicated that two-dimensional trajectory analysis using a computer can be a powerful technique to study diatom locomotion.

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Year:  2012        PMID: 22484858     DOI: 10.1007/s00249-012-0810-z

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  12 in total

1.  The taxonomic position of Phaeodactylum tricornutum.

Authors:  J C LEWIN
Journal:  J Gen Microbiol       Date:  1958-04

2.  Two-dimensional trajectory analysis of the diatom Navicula sp. using a micro chamber.

Authors:  Ayumu Murase; Yosuke Kubota; Shigeyuki Hirayama; Yoshikazu Kumashiro; Teruo Okano; Shigeki Mayama; Kazuo Umemura
Journal:  J Microbiol Methods       Date:  2011-09-21       Impact factor: 2.363

Review 3.  Oceanographic and biogeochemical insights from diatom genomes.

Authors:  Chris Bowler; Assaf Vardi; Andrew E Allen
Journal:  Ann Rev Mar Sci       Date:  2010

4.  Collective bacterial dynamics revealed using a three-dimensional population-scale defocused particle tracking technique.

Authors:  Mingming Wu; John W Roberts; Sue Kim; Donald L Koch; Matthew P DeLisa
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

5.  A capillarity mechanism for diatom gliding locomotion.

Authors:  R Gordon; R W Drum
Journal:  Proc Natl Acad Sci U S A       Date:  1970-09       Impact factor: 11.205

6.  Controlled nanoporous structures of a marine diatom.

Authors:  Kazuo Umemura; Xing Liao; Shigeki Mayama; Mohammed Gad
Journal:  J Nanosci Nanotechnol       Date:  2007-08

7.  Calcium is Necessary for Motility in the Diatom Amphora coffeaeformis.

Authors:  B Cooksey; K E Cooksey
Journal:  Plant Physiol       Date:  1980-01       Impact factor: 8.340

8.  Diatom gliding is the result of an actin-myosin motility system.

Authors:  N C Poulsen; I Spector; T P Spurck; T F Schultz; R Wetherbee
Journal:  Cell Motil Cytoskeleton       Date:  1999

9.  Diatom motility and low frequency electromagnetic fields--a new technique in the search for independent replication of results.

Authors:  N Clarkson; M S Davies; R Dixey
Journal:  Bioelectromagnetics       Date:  1999       Impact factor: 2.010

10.  Regulated growth of diatom cells on self-assembled monolayers.

Authors:  Kazuo Umemura; Tomoaki Yamada; Yuta Maeda; Koichi Kobayashi; Reiko Kuroda; Shigeki Mayama
Journal:  J Nanobiotechnology       Date:  2007-03-23       Impact factor: 10.435

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  1 in total

1.  Use of a microchamber for analysis of thermal variation of the gliding phenomenon of single Navicula pavillardii cells.

Authors:  Kazuo Umemura; Toru Miyabayashi; Hisao Taira; Akira Suzuki; Yoshikazu Kumashiro; Teruo Okano; Shigeki Mayama
Journal:  Eur Biophys J       Date:  2015-01-30       Impact factor: 1.733

  1 in total

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