Literature DB >> 22483263

Density of states-based molecular simulations.

Sadanand Singh1, Manan Chopra, Juan J de Pablo.   

Abstract

One of the central problems in statistical mechanics is that of finding the density of states of a system. Knowledge of the density of states of a system is equivalent to knowledge of its fundamental equation, from which all thermodynamic quantities can be obtained. Over the past several years molecular simulations have made considerable strides in their ability to determine the density of states of complex fluids and materials. In this review we discuss some of the more promising approaches proposed in the recent literature along with their advantages and limitations.

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Year:  2012        PMID: 22483263     DOI: 10.1146/annurev-chembioeng-062011-081032

Source DB:  PubMed          Journal:  Annu Rev Chem Biomol Eng        ISSN: 1947-5438            Impact factor:   11.059


  8 in total

1.  Isotropic-nematic phase transition in the Lebwohl-Lasher model from density of states simulations.

Authors:  Raj Shekhar; Jonathan K Whitmer; Rohit Malshe; J A Moreno-Razo; Tyler F Roberts; Juan J de Pablo
Journal:  J Chem Phys       Date:  2012-06-21       Impact factor: 3.488

2.  An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization.

Authors:  Daniel M Hinckley; Gordon S Freeman; Jonathan K Whitmer; Juan J de Pablo
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

3.  Liquid-crystal mediated nanoparticle interactions and gel formation.

Authors:  Jonathan K Whitmer; Abhijeet A Joshi; Tyler F Roberts; Juan J de Pablo
Journal:  J Chem Phys       Date:  2013-05-21       Impact factor: 3.488

4.  α-helix to β-hairpin transition of human amylin monomer.

Authors:  Sadanand Singh; Chi-cheng Chiu; Allam S Reddy; Juan J de Pablo
Journal:  J Chem Phys       Date:  2013-04-21       Impact factor: 3.488

5.  Effect of proline mutations on the monomer conformations of amylin.

Authors:  Chi-cheng Chiu; Sadanand Singh; Juan J de Pablo
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

6.  Nematic-field-driven positioning of particles in liquid crystal droplets.

Authors:  Jonathan K Whitmer; Xiaoguang Wang; Frederic Mondiot; Daniel S Miller; Nicholas L Abbott; Juan J de Pablo
Journal:  Phys Rev Lett       Date:  2013-11-26       Impact factor: 9.161

7.  An Analysis of Biomolecular Force Fields for Simulations of Polyglutamine in Solution.

Authors:  Aaron M Fluitt; Juan J de Pablo
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

8.  Secondary Structure of Rat and Human Amylin across Force Fields.

Authors:  Kyle Quynn Hoffmann; Michael McGovern; Chi-Cheng Chiu; Juan J de Pablo
Journal:  PLoS One       Date:  2015-07-29       Impact factor: 3.240

  8 in total

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