Literature DB >> 22480434

Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring.

S Parnell1, T R Gottwald, W R Gilks, F van den Bosch.   

Abstract

The early detection of an invading epidemic is crucial for successful disease control. Although models have been used extensively to test control strategies following the first detection of an epidemic, few studies have addressed the issue of how to achieve early detection in the first place. Moreover, sampling theory has made great progress in understanding how to estimate the incidence or spatial distribution of an epidemic but how to sample for early detection has been largely ignored. Using a simple epidemic model we demonstrate a method to calculate the incidence of an epidemic when it is discovered for the first time (given a monitoring programme taking samples at regular intervals). We use the method to explore how the intensity and frequency of sampling influences early detection. In particular, we find that for epidemics characterised by high population growth rates it is most effective to spread sampling resources evenly in time. In addition we derive a useful approximation to our method which results in a simple equation capturing the relation between monitoring and epidemic dynamics. Not only does this provide valuable new insight but it provides a simple rule of thumb for the design of monitoring programmes in practice.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22480434     DOI: 10.1016/j.jtbi.2012.03.009

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  10 in total

1.  Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery.

Authors:  S Parnell; T R Gottwald; N J Cunniffe; V Alonso Chavez; F van den Bosch
Journal:  Proc Biol Sci       Date:  2015-09-07       Impact factor: 5.349

2.  Translating surveillance data into incidence estimates.

Authors:  Y Bourhis; T Gottwald; F van den Bosch
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-07-08       Impact factor: 6.237

3.  Asymptomatic spread of huanglongbing and implications for disease control.

Authors:  Jo Ann Lee; Susan E Halbert; William O Dawson; Cecile J Robertson; James E Keesling; Burton H Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-01       Impact factor: 11.205

4.  A method of determining where to target surveillance efforts in heterogeneous epidemiological systems.

Authors:  Alexander J Mastin; Frank van den Bosch; Timothy R Gottwald; Vasthi Alonso Chavez; Stephen R Parnell
Journal:  PLoS Comput Biol       Date:  2017-08-28       Impact factor: 4.475

5.  A probabilistic census-travel model to predict introduction sites of exotic plant, animal and human pathogens.

Authors:  Tim Gottwald; Weiqi Luo; Drew Posny; Tim Riley; Frank Louws
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-07-08       Impact factor: 6.237

6.  Quantifying the hidden costs of imperfect detection for early detection surveillance.

Authors:  Alexander J Mastin; Frank van den Bosch; Femke van den Berg; Stephen R Parnell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-07-08       Impact factor: 6.237

7.  Optimising risk-based surveillance for early detection of invasive plant pathogens.

Authors:  Alexander J Mastin; Timothy R Gottwald; Frank van den Bosch; Nik J Cunniffe; Stephen Parnell
Journal:  PLoS Biol       Date:  2020-10-12       Impact factor: 8.029

Review 8.  Modelling cassava production and pest management under biotic and abiotic constraints.

Authors:  Vasthi Alonso Chavez; Alice E Milne; Frank van den Bosch; Justin Pita; C Finn McQuaid
Journal:  Plant Mol Biol       Date:  2021-07-27       Impact factor: 4.335

9.  Epidemiologically-based strategies for the detection of emerging plant pathogens.

Authors:  Alexander J Mastin; Frank van den Bosch; Yoann Bourhis; Stephen Parnell
Journal:  Sci Rep       Date:  2022-06-29       Impact factor: 4.996

10.  Optimal sampling strategies for detecting zoonotic disease epidemics.

Authors:  Jake M Ferguson; Jessica B Langebrake; Vincent L Cannataro; Andres J Garcia; Elizabeth A Hamman; Maia Martcheva; Craig W Osenberg
Journal:  PLoS Comput Biol       Date:  2014-06-26       Impact factor: 4.475

  10 in total

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