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Literature DB >> 22474258

Retrotransposon insertion targeting: a mechanism for homogenization of centromere sequences on nonhomologous chromosomes.

Abstract

The centromeres of most eukaryotic organisms consist of highly repetitive arrays that are similar across nonhomologous chromosomes. These sequences evolve rapidly, thus posing a mystery as to how such arrays can be homogenized. Recent work in species in which centromere-enriched retrotransposons occur indicates that these elements preferentially insert into the centromeric regions. In two different Arabidopsis species, a related element was recognized in which the specificity for such targeting was altered. These observations provide a partial explanation for how homogenization of centromere DNA sequences occurs.

Entities: Species

Mesh：

Substances：
Retroelements

Year: 2012 PMID： 22474258 PMCID： PMC3323874 DOI： 10.1101/gad.191049.112

Source DB: PubMed Journal: Genes Dev ISSN： 0890-9369 Impact factor: 11.361

16 in total

1. A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes.

Authors: G G Presting; L Malysheva; J Fuchs; I Schubert
Journal: Plant J Date: 1998-12 Impact factor: 6.417

2. Chromodomains direct integration of retrotransposons to heterochromatin.

Authors: Xiang Gao; Yi Hou; Hirotaka Ebina; Henry L Levin; Daniel F Voytas
Journal: Genome Res Date: 2008-02-06 Impact factor: 9.043

3. Construction and behavior of engineered minichromosomes in maize.

Authors: Weichang Yu; Fangpu Han; Zhi Gao; Juan M Vega; James A Birchler
Journal: Proc Natl Acad Sci U S A Date: 2007-05-14 Impact factor: 11.205

4. Widespread gene conversion in centromere cores.

Authors: Jinghua Shi; Sarah E Wolf; John M Burke; Gernot G Presting; Jeffrey Ross-Ibarra; R Kelly Dawe
Journal: PLoS Biol Date: 2010-03-09 Impact factor: 8.029

5. Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity.

Authors: Anupma Sharma; Gernot G Presting
Journal: Mol Genet Genomics Date: 2007-11-14 Impact factor: 3.291

6. Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize.

Authors: Wenli Zhang; Hye-Ran Lee; Dal-Hoe Koo; Jiming Jiang
Journal: Plant Cell Date: 2008-01-31 Impact factor: 11.277

7. High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.

Authors: Fangpu Han; Jonathan C Lamb; James A Birchler
Journal: Proc Natl Acad Sci U S A Date: 2006-02-21 Impact factor: 11.205

8. Differential localization of the centromere-specific proteins in the major centromeric satellite of Arabidopsis thaliana.

Authors: Fukashi Shibata; Minoru Murata
Journal: J Cell Sci Date: 2004-05-25 Impact factor: 5.285

9. Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae.

Authors: Brooke D Peterson-Burch; Dan Nettleton; Daniel F Voytas
Journal: Genome Biol Date: 2004-09-29 Impact factor: 13.583

10. Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons.

Authors: Thomas K Wolfgruber; Anupma Sharma; Kevin L Schneider; Patrice S Albert; Dal-Hoe Koo; Jinghua Shi; Zhi Gao; Fangpu Han; Hyeran Lee; Ronghui Xu; Jamie Allison; James A Birchler; Jiming Jiang; R Kelly Dawe; Gernot G Presting
Journal: PLoS Genet Date: 2009-11-20 Impact factor: 5.917

13 in total

Review 1. Engineered minichromosomes in plants.

Authors: James A Birchler
Journal: Chromosome Res Date: 2015-02 Impact factor: 5.239

Review 2. Genetic and epigenetic effects on centromere establishment.

Authors: Yick Hin Ling; Zhongyang Lin; Karen Wing Yee Yuen
Journal: Chromosoma Date: 2019-11-28 Impact factor: 4.316

3. Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres.

Authors: Jonathan I Gent; Kai Wang; Jiming Jiang; R Kelly Dawe
Journal: Genetics Date: 2015-06-10 Impact factor: 4.562

Review 4. Epigenetic control of mobile DNA as an interface between experience and genome change.

Authors: James A Shapiro
Journal: Front Genet Date: 2014-04-25 Impact factor: 4.599

5. Interstitial Telomeric Repeats Are Rare in Turtles.

Authors: Lorenzo Clemente; Sofia Mazzoleni; Eleonora Pensabene Bellavia; Barbora Augstenová; Markus Auer; Peter Praschag; Tomáš Protiva; Petr Velenský; Philipp Wagner; Uwe Fritz; Lukáš Kratochvíl; Michail Rovatsos
Journal: Genes (Basel) Date: 2020-06-16 Impact factor: 4.096

6. B chromosome in the beetle Coprophanaeus cyanescens (Scarabaeidae): emphasis in the organization of repetitive DNA sequences.

Authors: Sarah Gomes de Oliveira; Rita Cassia de Moura; Cesar Martins
Journal: BMC Genet Date: 2012-11-06 Impact factor: 2.797

7. Heterochromatin blocks constituting the entire short arms of acrocentric chromosomes of Azara's owl monkey: formation processes inferred from chromosomal locations.

Authors: Ornjira Prakhongcheep; Nampech Chaiprasertsri; Shoko Terada; Yuriko Hirai; Kornsorn Srikulnath; Hirohisa Hirai; Akihiko Koga
Journal: DNA Res Date: 2013-06-11 Impact factor: 4.458

8. Genome-wide survey and comparative analysis of LTR retrotransposons and their captured genes in rice and sorghum.

Authors: Shu-Ye Jiang; Srinivasan Ramachandran
Journal: PLoS One Date: 2013-07-29 Impact factor: 3.240

9. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Authors: Daniël P Melters; Keith R Bradnam; Hugh A Young; Natalie Telis; Michael R May; J Graham Ruby; Robert Sebra; Paul Peluso; John Eid; David Rank; José Fernando Garcia; Joseph L DeRisi; Timothy Smith; Christian Tobias; Jeffrey Ross-Ibarra; Ian Korf; Simon W L Chan
Journal: Genome Biol Date: 2013-01-30 Impact factor: 13.583

Review 10. Transposable elements: genome innovation, chromosome diversity, and centromere conflict.

Authors: Savannah J Klein; Rachel J O'Neill
Journal: Chromosome Res Date: 2018-01-13 Impact factor: 5.239