Literature DB >> 22472911

Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations.

Sayoko Yamamoto1, Ying Zhang, Takumi Yamaguchi, Tomoshi Kameda, Koichi Kato.   

Abstract

A novel methodology is presented for evaluating a dynamic ensemble of oligosaccharide conformations by lanthanide-assisted NMR spectroscopy combined with molecular dynamics (MD) simulations. The results obtained using the GM3 trisaccharide demonstrated that pseudocontact shift measurements offer a valuable experimental tool for the validation of MD simulations of highly flexible biomolecules. This journal is © The Royal Society of Chemistry 2012

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22472911     DOI： 10.1039/c2cc30353a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  11 in total

Review 1.  Structural and dynamic views of GM1 ganglioside.

Authors:  Maho Yagi-Utsumi; Koichi Kato
Journal:  Glycoconj J       Date:  2015-05-01       Impact factor: 2.916

Review 2.  Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides.

Authors:  Koichi Kato; Takumi Yamaguchi
Journal:  Glycoconj J       Date:  2015-06-07       Impact factor: 2.916

3.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

4.  Fluoroacetamide Moieties as NMR Spectroscopy Probes for the Molecular Recognition of GlcNAc-Containing Sugars: Modulation of the CH-π Stacking Interactions by Different Fluorination Patterns.

Authors:  Luca Unione; Maria Alcalá; Begoña Echeverria; Sonia Serna; Ana Ardá; Antonio Franconetti; F Javier Cañada; Tammo Diercks; Niels Reichardt; Jesús Jiménez-Barbero
Journal:  Chemistry       Date:  2017-02-23       Impact factor: 5.236

5.  Application of paramagnetic NMR-validated molecular dynamics simulation to the analysis of a conformational ensemble of a branched oligosaccharide.

Authors:  Ying Zhang; Sayoko Yamamoto; Takumi Yamaguchi; Koichi Kato
Journal:  Molecules       Date:  2012-05-31       Impact factor: 4.411

6.  Paramagnetic Ligand Tagging To Identify Protein Binding Sites.

Authors:  Ulrika Brath; Shashikala I Swamy; Alberte X Veiga; Ching-Chieh Tung; Filip Van Petegem; Máté Erdélyi
Journal:  J Am Chem Soc       Date:  2015-08-27       Impact factor: 15.419

7.  Application of Metabolic 13C Labeling in Conjunction with High-Field Nuclear Magnetic Resonance Spectroscopy for Comparative Conformational Analysis of High Mannose-Type Oligosaccharides.

Authors:  Yukiko Kamiya; Kotaro Yanagi; Toshihiko Kitajima; Takumi Yamaguchi; Yasunori Chiba; Koichi Kato
Journal:  Biomolecules       Date:  2013-01-25

Review 8.  "Rules of Engagement" of Protein-Glycoconjugate Interactions: A Molecular View Achievable by using NMR Spectroscopy and Molecular Modeling.

Authors:  Roberta Marchetti; Serge Perez; Ana Arda; Anne Imberty; Jesus Jimenez-Barbero; Alba Silipo; Antonio Molinaro
Journal:  ChemistryOpen       Date:  2016-06-07       Impact factor: 2.911

9.  Breaking the Limits in Analyzing Carbohydrate Recognition by NMR Spectroscopy: Resolving Branch-Selective Interaction of a Tetra-Antennary N-Glycan with Lectins.

Authors:  Angeles Canales; Irene Boos; Lukas Perkams; Lukas Karst; Thomas Luber; Theodoros Karagiannis; Gemma Domínguez; F Javier Cañada; Javier Pérez-Castells; Daniel Häussinger; Carlo Unverzagt; Jesus Jiménez-Barbero
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-24       Impact factor: 15.336

Review 10.  Novel NMR Avenues to Explore the Conformation and Interactions of Glycans.

Authors:  Pablo Valverde; Jon I Quintana; Jose I Santos; Ana Ardá; Jesús Jiménez-Barbero
Journal:  ACS Omega       Date:  2019-08-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.