Literature DB >> 22468597

Nature versus nurture: developing enzymes that function under extreme conditions.

Michael J Liszka1, Melinda E Clark, Elizabeth Schneider, Douglas S Clark.   

Abstract

Many industrial processes used to produce chemicals and pharmaceuticals would benefit from enzymes that function under extreme conditions. Enzymes from extremophilic microorganisms have evolved to function in a variety of extreme environments, and bioprospecting for these microorganisms has led to the discovery of new enzymes with high tolerance to nonnatural conditions. However, bioprospecting is inherently limited by the diversity of enzymes evolved by nature. Protein engineering has also been successful in generating extremophilic enzymes by both rational mutagenesis and directed evolution, but screening for activity under extreme conditions can be difficult. This review examines the emerging synergy between bioprospecting and protein engineering in developing extremophilic enzymes. Specific topics include unnatural industrial conditions relevant to biocatalysis, biophysical properties of extremophilic enzymes, and industrially relevant extremophilic enzymes found either in nature or through protein engineering.

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Year:  2012        PMID: 22468597     DOI: 10.1146/annurev-chembioeng-061010-114239

Source DB:  PubMed          Journal:  Annu Rev Chem Biomol Eng        ISSN: 1947-5438            Impact factor:   11.059


  36 in total

1.  Directed evolution of an ultrastable carbonic anhydrase for highly efficient carbon capture from flue gas.

Authors:  Oscar Alvizo; Luan J Nguyen; Christopher K Savile; Jamie A Bresson; Satish L Lakhapatri; Earl O P Solis; Richard J Fox; James M Broering; Michael R Benoit; Sabrina A Zimmerman; Scott J Novick; Jack Liang; James J Lalonde
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  A meta-analysis of the publicly available bacterial and archaeal sequence diversity in saline soils.

Authors:  Bin Ma; Jun Gong
Journal:  World J Microbiol Biotechnol       Date:  2013-06-12       Impact factor: 3.312

3.  Proteolysin, a novel highly thermostable and cosolvent-compatible protease from the thermophilic bacterium Coprothermobacter proteolyticus.

Authors:  Ana Toplak; Bian Wu; Fabrizia Fusetti; Peter J L M Quaedflieg; Dick B Janssen
Journal:  Appl Environ Microbiol       Date:  2013-07-12       Impact factor: 4.792

4.  Isolation and characterization of bacteria associated with the rhizosphere of halophytes (Salsola stocksii and Atriplex amnicola) for production of hydrolytic enzymes.

Authors:  Salma Mukhtar; Samina Mehnaz; Muhammad Sajjad Mirza; Kauser Abdulla Malik
Journal:  Braz J Microbiol       Date:  2019-01-08       Impact factor: 2.476

5.  Impact of soil salinity on the microbial structure of halophyte rhizosphere microbiome.

Authors:  Salma Mukhtar; Babur Saeed Mirza; Samina Mehnaz; Muhammad Sajjad Mirza; Joan Mclean; Kauser Abdulla Malik
Journal:  World J Microbiol Biotechnol       Date:  2018-08-20       Impact factor: 3.312

Review 6.  Advances in enzyme substrate analysis with capillary electrophoresis.

Authors:  Srikanth Gattu; Cassandra L Crihfield; Grace Lu; Lloyd Bwanali; Lindsay M Veltri; Lisa A Holland
Journal:  Methods       Date:  2018-02-27       Impact factor: 3.608

7.  Crystallization and preliminary X-ray diffraction analysis of the S-adenosylhomocysteine hydrolase (SAHH) from Thermotoga maritima.

Authors:  Miao He; Yingying Zheng; Chun-Hsiang Huang; Guojun Qian; Xiansha Xiao; Tzu-Ping Ko; Weilan Shao; Rey-Ting Guo
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

8.  Biochemical Characterization of Thermostable Carboxymethyl Cellulase and β-Glucosidase from Aspergillus fumigatus JCM 10253.

Authors:  Paramjeet Saroj; Manasa P; Korrapati Narasimhulu
Journal:  Appl Biochem Biotechnol       Date:  2022-02-09       Impact factor: 2.926

9.  Replacing a single atom accelerates the folding of a protein and increases its thermostability.

Authors:  Ulrich Arnold; Ronald T Raines
Journal:  Org Biomol Chem       Date:  2016-07-12       Impact factor: 3.876

10.  Regulation of Ras Paralog Thermostability by Networks of Buried Ionizable Groups.

Authors:  Daniel G Isom; Vishwajith Sridharan; Henrik G Dohlman
Journal:  Biochemistry       Date:  2016-01-06       Impact factor: 3.162

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