Literature DB >> 22468135

TOUCH-UP gradient amplification method.

F B Rowther1, H Kardooni, T Warr.   

Abstract

We report a unique amplification technique that works efficiently and specifically over a temperature range, rather than at one specific temperature, throughout the amplification process. As bisulfite-modified DNA is one of the difficult to amplify templates, we used this technique to amplify regions of promoter-associated CpG island for 11 genes using this template. This technique amplified specific products for every gene without requiring any optimization.

Entities:  

Keywords:  COBRA; DNA methylation analysis; bisulphite modified DNA; methylation specific PCR

Mesh:

Substances:

Year:  2012        PMID: 22468135      PMCID: PMC3313699          DOI: 10.7171/jbt.12-2301-004

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  5 in total

1.  A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.

Authors:  M Frommer; L E McDonald; D S Millar; C M Collis; F Watt; G W Grigg; P L Molloy; C L Paul
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-01       Impact factor: 11.205

2.  'Touchdown' PCR to circumvent spurious priming during gene amplification.

Authors:  R H Don; P T Cox; B J Wainwright; K Baker; J S Mattick
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

3.  Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE).

Authors:  M L Gonzalgo; P A Jones
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

4.  COBRA: a sensitive and quantitative DNA methylation assay.

Authors:  Z Xiong; P W Laird
Journal:  Nucleic Acids Res       Date:  1997-06-15       Impact factor: 16.971

5.  Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands.

Authors:  J G Herman; J R Graff; S Myöhänen; B D Nelkin; S B Baylin
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-03       Impact factor: 11.205

  5 in total
  3 in total

1.  CRISPR-Mediated Reactivation of DKK3 Expression Attenuates TGF-β Signaling in Prostate Cancer.

Authors:  Hoda Kardooni; Estela Gonzalez-Gualda; Emmanouil Stylianakis; Sina Saffaran; Jonathan Waxman; Robert M Kypta
Journal:  Cancers (Basel)       Date:  2018-05-28       Impact factor: 6.639

2.  Molecular Phylogeny, Character Evolution, and Biogeography of Hydrangea Section Cornidia, Hydrangeaceae.

Authors:  Carolina Granados Mendoza; Esteban Manuel Martínez Salas; Paul Goetghebeur; Stefan Wanke; Marie-Stéphanie Samain
Journal:  Front Plant Sci       Date:  2021-06-29       Impact factor: 5.753

3.  A genotyping method combining primer competition PCR with HRM analysis to identify point mutations in Duchenne animal models.

Authors:  Haizpea Lasa-Fernandez; Laura Mosqueira-Martín; Ainhoa Alzualde; Jaione Lasa-Elgarresta; Ainara Vallejo-Illarramendi
Journal:  Sci Rep       Date:  2020-10-14       Impact factor: 4.379

  3 in total

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