Literature DB >> 22467489

On the unyielding hydrophobic core of villin headpiece.

Jeffrey W Brown1, Jeremiah D Farelli, C James McKnight.   

Abstract

Villin headpiece (HP67) is a small, autonomously-folding domain that has become a model system for understanding the fundamental tenets governing protein folding. In this communication, we explore the role that Leu61 plays in the structure and stability of the construct. Deletion of Leu61 results in a completely unfolded protein that cannot be expressed in Escherichia coli. Omission of only the aliphatic leucine side chain (HP67 L61G) perturbed neither the backbone conformation nor the orientation of local hydrophobic side chains. As a result, a large, solvent-exposed hydrophobic pocket, a negative replica of the leucine side-chain, was created on the surface. The loss of the hydrophobic interface between leucine 61 and the hydrophobic pocket destabilized the construct by ~3.3 kcal/mol. Insertion of a single glycine residue immediately before Leu61 (HP67 L61[GL]) was also highly destabilizing and had the effect of altering the backbone conformation (α-helix to π-helix) in order to precisely preserve the wild-type position and conformation of all hydrophobic residues, including Leu61. In addition to demonstrating that the hydrophobic side-chain of Leu61 is critically important for the stability of villin headpiece, our results are consistent with the notion that the precise interactions present within the hydrophobic core, rather than the hydrogen bonds that define the secondary structure, specify a protein's fold.
Copyright © 2012 The Protein Society.

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Year:  2012        PMID: 22467489      PMCID: PMC3403462          DOI: 10.1002/pro.2048

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  26 in total

1.  The role of aromatic residues in the hydrophobic core of the villin headpiece subdomain.

Authors:  Benjamin S Frank; Didem Vardar; Deirdre A Buckley; C James McKnight
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

4.  A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range.

Authors:  M M Santoro; D W Bolen
Journal:  Biochemistry       Date:  1992-05-26       Impact factor: 3.162

5.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

6.  How amino-acid insertions are allowed in an alpha-helix of T4 lysozyme.

Authors:  D W Heinz; W A Baase; F W Dahlquist; B W Matthews
Journal:  Nature       Date:  1993-02-11       Impact factor: 49.962

7.  On unsatisfied hydrogen bonds in the N-terminal subdomain of villin headpiece.

Authors:  Jeffrey W Brown; Jeremiah D Farelli; C James McKnight
Journal:  J Mol Biol       Date:  2011-08-31       Impact factor: 5.469

8.  Cysteine scanning mutagenesis at 40 of 76 positions in villin headpiece maps the F-actin binding site and structural features of the domain.

Authors:  D S Doering; P Matsudaira
Journal:  Biochemistry       Date:  1996-10-01       Impact factor: 3.162

9.  The NMR structure of dematin headpiece reveals a dynamic loop that is conformationally altered upon phosphorylation at a distal site.

Authors:  Benjamin S Frank; Didem Vardar; Athar H Chishti; C James McKnight
Journal:  J Biol Chem       Date:  2003-12-02       Impact factor: 5.157

10.  Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.

Authors:  Valentin A Ilyin; Alexej Abyzov; Chesley M Leslin
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

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  1 in total

1.  Selenomethionine, p-cyanophenylalanine pairs provide a convenient, sensitive, non-perturbing fluorescent probe of local helical structure.

Authors:  Ivan Peran; Matthew D Watson; Osman Bilsel; Daniel P Raleigh
Journal:  Chem Commun (Camb)       Date:  2016-02-04       Impact factor: 6.222

  1 in total

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