Literature DB >> 22463262

Effect of hydrogen bond anharmonicity on supersonic discrete Davydov soliton propagation.

Luis A Cisneros-Ake1, A A Minzoni.   

Abstract

We consider the propagation of energy along a protein chain in the Davydov approximation. We study the fully discrete Davydov equations including the anharmonic corrections in the hydrogen bond potential and find approximate variational solutions. We show analytically that for the harmonic interaction of the hydrogen bonds of the Davydov model the waves travel with velocities less than half the sound velocity for the relevant biological parameters. We find, for weak nonlinearity of the hydrogen bonds, two branches of soliton solutions. The first one gives a new type of strongly stable cusped discrete supersonic soliton. The second branch captures the main component of a more complicated breather solution compared to the one studied by Gaididei et al. and reproduces the Davydov soliton of the continuum limit. These results show the possibility of coherent protein chain deformation due to the anharmonicity of the hydrogen bond interactions. These supersonic waves are shown to provide a viable mechanism for energy transport in spite of the temperature influence in the soliton lifetime.
© 2012 American Physical Society

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22463262     DOI: 10.1103/PhysRevE.85.021925

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  1 in total

1.  Nano breathers and molecular dynamics simulations in hydrogen-bonded chains.

Authors:  L Kavitha; A Muniyappan; A Prabhu; S Zdravković; S Jayanthi; D Gopi
Journal:  J Biol Phys       Date:  2012-10-12       Impact factor: 1.365

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.