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Literature DB >> 22461665

Illumina sequencing technology as a method of identifying T-DNA insertion loci in activation-tagged Arabidopsis thaliana plants.

Joanna K Polko, Mohamed-Ramzi Temanni, Martijn van Zanten, Wilbert van Workum, Sven Iburg, Ronald Pierik, Laurentius A C J Voesenek, Anton J M Peeters.

Abstract

Entities: Species

Mesh：

Substances：
DNA, Bacterial
T-DNA

Year: 2012 PMID： 22461665 DOI： 10.1093/mp/sss022

Source DB: PubMed Journal: Mol Plant ISSN： 1674-2052 Impact factor: 13.164

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9 in total

Review 1. Brachypodium as an emerging model for cereal-pathogen interactions.

Authors: Timothy L Fitzgerald; Jonathan J Powell; Katharina Schneebeli; M Mandy Hsia; Donald M Gardiner; Jennifer N Bragg; C Lynne McIntyre; John M Manners; Mick Ayliffe; Michelle Watt; John P Vogel; Robert J Henry; Kemal Kazan
Journal: Ann Bot Date: 2015-04 Impact factor: 4.357

2. Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis.

Authors: Joanna K Polko; Jop A van Rooij; Steffen Vanneste; Ronald Pierik; Ankie M H Ammerlaan; Marleen H Vergeer-van Eijk; Fionn McLoughlin; Kerstin Gühl; Gert Van Isterdael; Laurentius A C J Voesenek; Frank F Millenaar; Tom Beeckman; Anton J M Peeters; Athanasius F M Marée; Martijn van Zanten
Journal: Plant Physiol Date: 2015-06-03 Impact factor: 8.340

3. Measurement of Transgene Copy Number in Plants Using Droplet Digital PCR.

Authors: Yao-Min Cai; Quentin M Dudley; Nicola J Patron
Journal: Bio Protoc Date: 2021-07-05

4. Time- and cost-efficient identification of T-DNA insertion sites through targeted genomic sequencing.

Authors: Étienne Lepage; Éric Zampini; Brian Boyle; Normand Brisson
Journal: PLoS One Date: 2013-08-12 Impact factor: 3.240

5. Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing.

Authors: Vijaykumar Veerappan; Mehul Jani; Khem Kadel; Taylor Troiani; Ronny Gale; Tyler Mayes; Elena Shulaev; Jiangqi Wen; Kirankumar S Mysore; Rajeev K Azad; Rebecca Dickstein
Journal: BMC Genomics Date: 2016-02-27 Impact factor: 3.969

Illumina sequencing technology as a method of identifying T-DNA insertion loci in activation-tagged Arabidopsis thaliana plants.

Review 1. Brachypodium as an emerging model for cereal-pathogen interactions.

2. Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis.

3. Measurement of Transgene Copy Number in Plants Using Droplet Digital PCR.

4. Time- and cost-efficient identification of T-DNA insertion sites through targeted genomic sequencing.

5. Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing.

Review 6. Molecular Approaches for High Throughput Detection and Quantification of Genetically Modified Crops: A Review.

7. Mapping of transgenic alleles in soybean using a nanopore-based sequencing strategy.

8. Ethylene promotes hyponastic growth through interaction with ROTUNDIFOLIA3/CYP90C1 in Arabidopsis.

9. Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.