Literature DB >> 22461551

Complete genome sequence of Rahnella sp. strain Y9602, a gammaproteobacterium isolate from metal- and radionuclide-contaminated soil.

Robert J Martinez1, David Bruce, Chris Detter, Lynne A Goodwin, James Han, Cliff S Han, Brittany Held, Miriam L Land, Natalia Mikhailova, Matt Nolan, Len Pennacchio, Sam Pitluck, Roxanne Tapia, Tanja Woyke, Patricia A Sobecky.   

Abstract

Rahnella sp. strain Y9602 is a gammaproteobacterium isolated from contaminated subsurface soils that is capable of promoting uranium phosphate mineralization as a result of constitutive phosphatase activity. Here we report the first complete genome sequence of an isolate belonging to the genus Rahnella.

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Year:  2012        PMID： 22461551      PMCID： PMC3318479          DOI： 10.1128/JB.00095-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Responses of the anaerobic bacterial community to addition of organic C in chromium(VI)- and iron(III)-amended microcosms.

Authors:  Peter S Kourtev; Cindy H Nakatsu; Allan Konopka
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

8.  Horizontal gene transfer of PIB-type ATPases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils.

Authors:  Robert J Martinez; Yanling Wang; Melanie A Raimondo; Jonna M Coombs; Tamar Barkay; Patricia A Sobecky
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

9.  Aerobic uranium (VI) bioprecipitation by metal-resistant bacteria isolated from radionuclide- and metal-contaminated subsurface soils.

Authors:  Robert J Martinez; Melanie J Beazley; Martial Taillefert; Adrian K Arakaki; Jeffrey Skolnick; Patricia A Sobecky
Journal:  Environ Microbiol       Date:  2007-12       Impact factor: 5.491

10.  Uranium biomineralization as a result of bacterial phosphatase activity: insights from bacterial isolates from a contaminated subsurface.

Authors:  Melanie J Beazley; Robert J Martinez; Patricia A Sobecky; Samuel M Webb; Martial Taillefert
Journal:  Environ Sci Technol       Date:  2007-08-15       Impact factor: 9.028
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  1 in total

1.  Comparative Genomics Assisted Functional Characterization of Rahnella aceris ZF458 as a Novel Plant Growth Promoting Rhizobacterium.

Authors:  Shuai Xu; Yurong Zhao; Yue Peng; Yanxia Shi; Xuewen Xie; Ali Chai; Baoju Li; Lei Li
Journal:  Front Microbiol       Date:  2022-04-04       Impact factor: 6.064
  1 in total

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