Literature DB >> 22461541

Genome sequence of Janthinobacterium sp. strain PAMC 25724, isolated from alpine glacier cryoconite.

Su Jin Kim1, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, Hyoungseok Lee, Jungeun Lee, In-Geol Choi, Hyun Park.   

Abstract

The draft genome of Janthinobacterium sp. strain PAMC 25724, which is a violacein-producing psychrotolerant bacterium, was determined. The strain was isolated from glacier cryoconite of the Alps mountain permafrost region. The sequence will allow identification and characterization of the genetic determination of its cold-adaptive properties.

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Year:  2012        PMID: 22461541      PMCID: PMC3318480          DOI: 10.1128/JB.00096-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  7 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

3.  Janthinocins A, B and C, novel peptide lactone antibiotics produced by Janthinobacterium lividum. II. Structure elucidation.

Authors:  J H Johnson; A A Tymiak; M S Bolgar
Journal:  J Antibiot (Tokyo)       Date:  1990-08       Impact factor: 2.649

4.  Violacein and biofilm production in Janthinobacterium lividum.

Authors:  F Pantanella; F Berlutti; C Passariello; S Sarli; C Morea; S Schippa
Journal:  J Appl Microbiol       Date:  2007-04       Impact factor: 3.772

5.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  Amphibian chemical defense: antifungal metabolites of the microsymbiont Janthinobacterium lividum on the salamander Plethodon cinereus.

Authors:  Robert M Brucker; Reid N Harris; Christian R Schwantes; Thomas N Gallaher; Devon C Flaherty; Brianna A Lam; Kevin P C Minbiole
Journal:  J Chem Ecol       Date:  2008-10-24       Impact factor: 2.626

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

  7 in total
  21 in total

1.  Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere.

Authors:  Fernanda P Cid; Fumito Maruyama; Kazunori Murase; Steffen P Graether; Giovanni Larama; Leon A Bravo; Milko A Jorquera
Journal:  Extremophiles       Date:  2018-02-28       Impact factor: 2.395

2.  Genome Sequence of Mushroom Soft-Rot Pathogen Janthinobacterium agaricidamnosum.

Authors:  Katharina Graupner; Gerald Lackner; Christian Hertweck
Journal:  Genome Announc       Date:  2015-04-16

3.  Genome Sequence of the Soil Bacterium Janthinobacterium sp. KBS0711.

Authors:  William R Shoemaker; Mario E Muscarella; Jay T Lennon
Journal:  Genome Announc       Date:  2015-06-18

4.  High-level production of violacein by the newly isolated Duganella violaceinigra str. NI28 and its impact on Staphylococcus aureus.

Authors:  Seong Yeol Choi; Sooyeon Kim; Sungsoo Lyuck; Seung Bum Kim; Robert J Mitchell
Journal:  Sci Rep       Date:  2015-10-22       Impact factor: 4.379

5.  Microbial Community Structure of Subglacial Lake Whillans, West Antarctica.

Authors:  Amanda M Achberger; Brent C Christner; Alexander B Michaud; John C Priscu; Mark L Skidmore; Trista J Vick-Majors
Journal:  Front Microbiol       Date:  2016-09-22       Impact factor: 5.640

6.  The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases.

Authors:  Claudia Hornung; Anja Poehlein; Frederike S Haack; Martina Schmidt; Katja Dierking; Andrea Pohlen; Hinrich Schulenburg; Melanie Blokesch; Laure Plener; Kirsten Jung; Andreas Bonge; Ines Krohn-Molt; Christian Utpatel; Gabriele Timmermann; Eva Spieck; Andreas Pommerening-Röser; Edna Bode; Helge B Bode; Rolf Daniel; Christel Schmeisser; Wolfgang R Streit
Journal:  PLoS One       Date:  2013-02-06       Impact factor: 3.240

Review 7.  Violacein: Properties and Production of a Versatile Bacterial Pigment.

Authors:  Seong Yeol Choi; Kyoung-hye Yoon; Jin Il Lee; Robert J Mitchell
Journal:  Biomed Res Int       Date:  2015-08-03       Impact factor: 3.411

Review 8.  Psychrophilic enzymes: from folding to function and biotechnology.

Authors:  Georges Feller
Journal:  Scientifica (Cairo)       Date:  2013-01-17

9.  Winter bloom of a rare betaproteobacterium in the Arctic Ocean.

Authors:  Laura Alonso-Sáez; Michael Zeder; Tommy Harding; Jakob Pernthaler; Connie Lovejoy; Stefan Bertilsson; Carlos Pedrós-Alió
Journal:  Front Microbiol       Date:  2014-08-20       Impact factor: 5.640

10.  Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?

Authors:  Sara M E Rassner; Alexandre M Anesio; Susan E Girdwood; Katherina Hell; Jarishma K Gokul; David E Whitworth; Arwyn Edwards
Journal:  Front Microbiol       Date:  2016-06-21       Impact factor: 5.640

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