Literature DB >> 22461030

A nomenclature for intestinal in vitro cultures.

Matthias Stelzner1, Michael Helmrath, James C Y Dunn, Susan J Henning, Courtney W Houchen, Calvin Kuo, John Lynch, Linheng Li, Scott T Magness, Martin G Martin, Melissa H Wong, Jian Yu.   

Abstract

Many advances have been reported in the long-term culture of intestinal mucosal cells in recent years. A significant number of publications have described new culture media, cell formations, and growth patterns. Furthermore, it is now possible to study, e.g., the capabilities of isolated stem cells or the interactions between stem cells and mesenchyme. However, at the moment there is significant variation in the way these structures are described and named. A standardized nomenclature would benefit the ability to communicate and compare findings from different laboratories using the different culture systems. To address this issue, members of the NIH Intestinal Stem Cell Consortium herein propose a systematic nomenclature for in vitro cultures of the small and large intestine. We begin by describing the structures that are generated by preparative steps. We then define and describe structures produced in vitro, specifically: enterosphere, enteroid, reconstituted intestinal organoid, induced intestinal organoid, colonosphere, colonoid, and colonic organoid.

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Year:  2012        PMID: 22461030      PMCID: PMC3378093          DOI: 10.1152/ajpgi.00493.2011

Source DB:  PubMed          Journal:  Am J Physiol Gastrointest Liver Physiol        ISSN: 0193-1857            Impact factor:   4.052


  23 in total

1.  Maintenance of functional stem cells in isolated and cultured adult intestinal epithelium.

Authors:  C Booth; J A O'Shea; C S Potten
Journal:  Exp Cell Res       Date:  1999-06-15       Impact factor: 3.905

Review 2.  Intestinal epithelial stem cells and progenitors.

Authors:  Matthew Bjerknes; Hazel Cheng
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

3.  Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.

Authors:  Toshiro Sato; Robert G Vries; Hugo J Snippert; Marc van de Wetering; Nick Barker; Daniel E Stange; Johan H van Es; Arie Abo; Pekka Kujala; Peter J Peters; Hans Clevers
Journal:  Nature       Date:  2009-03-29       Impact factor: 49.962

4.  Orthotopic transplantation of intestinal mucosal organoids in rodents.

Authors:  Jeffrey R Avansino; David C Chen; Vicki D Hoagland; Jacob D Woolman; Matthias Stelzner
Journal:  Surgery       Date:  2006-07-28       Impact factor: 3.982

5.  Treatment of bile acid malabsorption using ileal stem cell transplantation.

Authors:  Jeffrey R Avansino; David C Chen; Vicki D Hoagland; Jacob D Woolman; W Geoffrey Haigh; Matthias Stelzner
Journal:  J Am Coll Surg       Date:  2005-09-23       Impact factor: 6.113

6.  Colonic crypt cell proliferation state assessed by whole crypt microdissection in sporadic neoplasia and familial adenomatous polyposis.

Authors:  S J Mills; J C Mathers; P D Chapman; J Burn; A Gunn
Journal:  Gut       Date:  2001-01       Impact factor: 23.059

7.  Distinct levels of Sox9 expression mark colon epithelial stem cells that form colonoids in culture.

Authors:  S Ramalingam; G W Daughtridge; M J Johnston; A D Gracz; S T Magness
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2011-10-13       Impact factor: 4.052

8.  Subepithelial fibroblast cell lines from different levels of gut axis display regional characteristics.

Authors:  M Plateroti; D C Rubin; I Duluc; R Singh; C Foltzer-Jourdainne; J N Freund; M Kedinger
Journal:  Am J Physiol       Date:  1998-05

9.  Intestinal stem cell organoid transplantation generates neomucosa in dogs.

Authors:  Vatche G Agopian; David C Chen; Jeffrey R Avansino; Matthias Stelzner
Journal:  J Gastrointest Surg       Date:  2009-01-23       Impact factor: 3.452

10.  The development of a method for the preparation of rat intestinal epithelial cell primary cultures.

Authors:  G S Evans; N Flint; A S Somers; B Eyden; C S Potten
Journal:  J Cell Sci       Date:  1992-01       Impact factor: 5.285

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  107 in total

1.  Peyer's patch M cells derived from Lgr5(+) stem cells require SpiB and are induced by RankL in cultured "miniguts".

Authors:  Wim de Lau; Pekka Kujala; Kerstin Schneeberger; Sabine Middendorp; Vivian S W Li; Nick Barker; Anton Martens; Frans Hofhuis; Rodney P DeKoter; Peter J Peters; Edward Nieuwenhuis; Hans Clevers
Journal:  Mol Cell Biol       Date:  2012-07-09       Impact factor: 4.272

2.  Cholesterol auxotrophy and intolerance to ezetimibe in mice with SREBP-2 deficiency in the intestine.

Authors:  Shunxing Rong; Jeffrey G McDonald; Luke J Engelking
Journal:  J Lipid Res       Date:  2017-06-19       Impact factor: 5.922

Review 3.  Physiologically relevant human tissue models for infectious diseases.

Authors:  Melody Mills; Mary K Estes
Journal:  Drug Discov Today       Date:  2016-06-25       Impact factor: 7.851

Review 4.  Intestinal Organoids: New Frontiers in the Study of Intestinal Disease and Physiology.

Authors:  Thomas E Wallach; James R Bayrer
Journal:  J Pediatr Gastroenterol Nutr       Date:  2017-02       Impact factor: 2.839

5.  Transcriptional corepressor MTG16 regulates small intestinal crypt proliferation and crypt regeneration after radiation-induced injury.

Authors:  Shenika V Poindexter; Vishruth K Reddy; Mukul K Mittal; Amanda M Williams; M Kay Washington; Elizabeth Harris; Amanda Mah; Scott W Hiebert; Kshipra Singh; Rupesh Chaturvedi; Keith T Wilson; P Kay Lund; Christopher S Williams
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2015-01-08       Impact factor: 4.052

Review 6.  Modeling Host-Pathogen Interactions in the Context of the Microenvironment: Three-Dimensional Cell Culture Comes of Age.

Authors:  Jennifer Barrila; Aurélie Crabbé; Jiseon Yang; Karla Franco; Seth D Nydam; Rebecca J Forsyth; Richard R Davis; Sandhya Gangaraju; C Mark Ott; Carolyn B Coyne; Mina J Bissell; Cheryl A Nickerson
Journal:  Infect Immun       Date:  2018-10-25       Impact factor: 3.441

7.  Live imaging analysis of human gastric epithelial spheroids reveals spontaneous rupture, rotation and fusion events.

Authors:  T Andrew Sebrell; Barkan Sidar; Rachel Bruns; Royce A Wilkinson; Blake Wiedenheft; Paul J Taylor; Brian A Perrino; Linda C Samuelson; James N Wilking; Diane Bimczok
Journal:  Cell Tissue Res       Date:  2017-11-25       Impact factor: 5.249

8.  Capture and 3D culture of colonic crypts and colonoids in a microarray platform.

Authors:  Yuli Wang; Asad A Ahmad; Pavak K Shah; Christopher E Sims; Scott T Magness; Nancy L Allbritton
Journal:  Lab Chip       Date:  2013-12-07       Impact factor: 6.799

9.  Body mass index and risk of colorectal carcinoma subtypes classified by tumor differentiation status.

Authors:  Akiko Hanyuda; Yin Cao; Tsuyoshi Hamada; Jonathan A Nowak; Zhi Rong Qian; Yohei Masugi; Annacarolina da Silva; Li Liu; Keisuke Kosumi; Thing Rinda Soong; Iny Jhun; Kana Wu; Xuehong Zhang; Mingyang Song; Jeffrey A Meyerhardt; Andrew T Chan; Charles S Fuchs; Edward L Giovannucci; Shuji Ogino; Reiko Nishihara
Journal:  Eur J Epidemiol       Date:  2017-05-16       Impact factor: 8.082

10.  Compartmentalized accumulation of cAMP near complexes of multidrug resistance protein 4 (MRP4) and cystic fibrosis transmembrane conductance regulator (CFTR) contributes to drug-induced diarrhea.

Authors:  Changsuk Moon; Weiqiang Zhang; Aixia Ren; Kavisha Arora; Chandrima Sinha; Sunitha Yarlagadda; Koryse Woodrooffe; John D Schuetz; Koteswara Rao Valasani; Hugo R de Jonge; Shiva Kumar Shanmukhappa; Mohamed Tarek M Shata; Randal K Buddington; Kaushik Parthasarathi; Anjaparavanda P Naren
Journal:  J Biol Chem       Date:  2015-03-11       Impact factor: 5.157

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