Literature DB >> 22456736

Genome-wide recombination in Chlamydia trachomatis.

Sandeep J Joseph1, Timothy D Read.   

Abstract

A new study reports comparative genomic analysis of 52 geographically diverse strains of Chlamydia trachomatis. The authors reconstruct a genome-wide phylogeny of the species and report extensive genome-wide recombination across multiple lineages of this intracellular bacterial pathogen.

Entities:  

Mesh：

Year:  2012        PMID： 22456736     DOI： 10.1038/ng.2225

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  11 in total

Review 1.  Lymphogranuloma venereum proctocolitis: a silent endemic disease in men who have sex with men in industrialised countries.

Authors:  R Martin-Iguacel; J M Llibre; H Nielsen; E Heras; L Matas; R Lugo; B Clotet; G Sirera
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2010-05-28       Impact factor: 3.267

2.  Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots.

Authors:  João P Gomes; William J Bruno; Alexandra Nunes; Nicole Santos; Carlos Florindo; Maria J Borrego; Deborah Dean
Journal:  Genome Res       Date:  2006-11-07       Impact factor: 9.043

Review 3.  Lymphogranuloma venereum.

Authors:  R A Burgoyne
Journal:  Prim Care       Date:  1990-03       Impact factor: 2.907

4.  Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination.

Authors:  Brendan M Jeffrey; Robert J Suchland; Kelsey L Quinn; John R Davidson; Walter E Stamm; Daniel D Rockey
Journal:  Infect Immun       Date:  2010-03-22       Impact factor: 3.441

5.  Lateral gene transfer in vitro in the intracellular pathogen Chlamydia trachomatis.

Authors:  Robert Demars; Jason Weinfurter; Erin Guex; John Lin; Yvonne Potucek
Journal:  J Bacteriol       Date:  2006-11-22       Impact factor: 3.490

6.  Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.

Authors:  R S Stephens; S Kalman; C Lammel; J Fan; R Marathe; L Aravind; W Mitchell; L Olinger; R L Tatusov; Q Zhao; E V Koonin; R W Davis
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

7.  Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages.

Authors:  Naraporn Somboonna; Raymond Wan; David M Ojcius; Matthew A Pettengill; Sandeep J Joseph; Alexander Chang; Ray Hsu; Timothy D Read; Deborah Dean
Journal:  MBio       Date:  2011-05-03       Impact factor: 7.867

8.  Interplay of recombination and selection in the genomes of Chlamydia trachomatis.

Authors:  Sandeep J Joseph; Xavier Didelot; Khanjan Gandhi; Deborah Dean; Timothy D Read
Journal:  Biol Direct       Date:  2011-05-26       Impact factor: 4.540

9.  Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.

Authors:  Simon R Harris; Ian N Clarke; Helena M B Seth-Smith; Anthony W Solomon; Lesley T Cutcliffe; Peter Marsh; Rachel J Skilton; Martin J Holland; David Mabey; Rosanna W Peeling; David A Lewis; Brian G Spratt; Magnus Unemo; Kenneth Persson; Carina Bjartling; Robert Brunham; Henry J C de Vries; Servaas A Morré; Arjen Speksnijder; Cécile M Bébéar; Maïté Clerc; Bertille de Barbeyrac; Julian Parkhill; Nicholas R Thomson
Journal:  Nat Genet       Date:  2012-03-11       Impact factor: 38.330

10.  Global genetic population structure of Bacillus anthracis.

Authors:  Matthew N Van Ert; W Ryan Easterday; Lynn Y Huynh; Richard T Okinaka; Martin E Hugh-Jones; Jacques Ravel; Shaylan R Zanecki; Talima Pearson; Tatum S Simonson; Jana M U'Ren; Sergey M Kachur; Rebecca R Leadem-Dougherty; Shane D Rhoton; Guenevier Zinser; Jason Farlow; Pamala R Coker; Kimothy L Smith; Bingxiang Wang; Leo J Kenefic; Claire M Fraser-Liggett; David M Wagner; Paul Keim
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240
View more
  12 in total

1.  High-resolution multilocus sequence typing for Chlamydia trachomatis: improved results for clinical samples with low amounts of C. trachomatis DNA.

Authors:  Shlomo Pilo; Gal Zizelski Valenci; Mor Rubinstein; Lea Pichadze; Yael Scharf; Zeev Dveyrin; Efrat Rorman; Israel Nissan
Journal:  BMC Microbiol       Date:  2021-01-18       Impact factor: 3.605

2.  Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages.

Authors:  Patiyan Andersson; Simon R Harris; Helena M B Seth Smith; James Hadfield; Colette O'Neill; Lesley T Cutcliffe; Fiona P Douglas; L Valerie Asche; John D Mathews; Susan I Hutton; Derek S Sarovich; Steven Y C Tong; Ian N Clarke; Nicholas R Thomson; Philip M Giffard
Journal:  Nat Commun       Date:  2016-02-25       Impact factor: 14.919

3.  Enrichment by hybridisation of long DNA fragments for Nanopore sequencing.

Authors:  Sabine E Eckert; Jackie Z-M Chan; Darren Houniet; Judy Breuer; Graham Speight
Journal:  Microb Genom       Date:  2016-09-20

4.  Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae.

Authors:  Hanna Marti; Hoyon Kim; Sandeep J Joseph; Stacey Dojiri; Timothy D Read; Deborah Dean
Journal:  Front Microbiol       Date:  2017-02-07       Impact factor: 5.640

Review 5.  Culture-independent approaches to chlamydial genomics.

Authors:  Alyce Taylor-Brown; Danielle Madden; Adam Polkinghorne
Journal:  Microb Genom       Date:  2018-01-03

6.  Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure.

Authors:  Sandeep J Joseph; Xavier Didelot; James Rothschild; Henry J C de Vries; Servaas A Morré; Timothy D Read; Deborah Dean
Journal:  Mol Biol Evol       Date:  2012-08-13       Impact factor: 16.240

7.  Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range.

Authors:  Timothy D Read; Sandeep J Joseph; Xavier Didelot; Brooke Liang; Lisa Patel; Deborah Dean
Journal:  mBio       Date:  2013-03-26       Impact factor: 7.867

8.  Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

Authors:  Sandeep J Joseph; Ben Li; Tanvi Ghonasgi; Chad P Haase; Zhaohui S Qin; Deborah Dean; Timothy D Read
Journal:  PLoS One       Date:  2014-06-27       Impact factor: 3.240

9.  Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans.

Authors:  Sandeep J Joseph; Hanna Marti; Xavier Didelot; Santiago Castillo-Ramirez; Timothy D Read; Deborah Dean
Journal:  Genome Biol Evol       Date:  2015-10-27       Impact factor: 3.416

10.  Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay.

Authors:  Rosemary S Turingan; Ludmila Kaplun; Greice Krautz-Peterson; Sarah Norsworthy; Anna Zolotova; Sandeep J Joseph; Timothy D Read; Deborah Dean; Eugene Tan; Richard F Selden
Journal:  PLoS One       Date:  2017-05-31       Impact factor: 3.240
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.