| Literature DB >> 22452970 |
Gioia Capelli1, Silvia Ravagnan, Fabrizio Montarsi, Silvia Ciocchetta, Stefania Cazzin, Elena Porcellato, Amira Mustafa Babiker, Rudi Cassini, Annalisa Salviato, Giovanni Cattoli, Domenico Otranto.
Abstract
BACKGROUND: Ixodes ricinus, a competent vector of several pathogens, is the tick species most frequently reported to bite humans in Europe. The majority of human cases of Lyme borreliosis (LB) and tick-borne encephalitis (TBE) occur in the north-eastern region of Italy. The aims of this study were to detect the occurrence of endemic and emergent pathogens in north-eastern Italy using adult tick screening, and to identify areas at risk of pathogen transmission. Based on our results, different strategies for tick collection and pathogen screening and their relative costs were evaluated and discussed.Entities:
Mesh:
Year: 2012 PMID: 22452970 PMCID: PMC3337281 DOI: 10.1186/1756-3305-5-61
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Figure 1Map of north-eastern Italy showing the 31 sites in which adult ticks were found (yellow: sites negative for pathogens; red: sites positive for one or more pathogens; number of pathogens/site is also reported within each red symbol).
Biomolecular method used for pathogen identification, target genes, primers, probes and references.
| Species | method | gene | primers | Nucleotide sequence (5'- 3') | Amplicon | |
|---|---|---|---|---|---|---|
| Ixodes | PCR | 16S ribosomal RNA | F-16sIxodes | AAAAAAATACTCTAGGGATAACAGCGTAA | 97 | [ |
| (extraction control) | R-16sIxodes | ACCAAAAAAGAATCCTAATCCAACA | ||||
| 16s-Ixodes-Probe | TTTTGGATAGTTCATATAGATAAAATAGTTTGC GACCTCG | |||||
| real time PCR (duplex) | 23S-rRNA | Bb23Sf | CGAGTCTTAAAAGGGCGATTTAGT | 75 | [ | |
| Bb23Sr | GCTTCAGCCTGGCCATAAATAG | |||||
| Bb23Sp-FAM | AGATGTGGTAGACCCGAAGCCGAGTG | |||||
| real time PCR (duplex) | msp2 | ApMSP2f | ATGGAAGGTAGTGTTGGTTATGGTATT | 77 | [ | |
| ApMSP2r | TTGGTCTTGAAGCGCTCGTA | |||||
| ApMSP2p-HEX | TGGTGCCAGGGTTGAGCTTGAGATTG | |||||
| PCR | flagellin | FLA1 | AGAGCAACTTACAGACGAAATTAAT | 482 | [ | |
| FLA2 | CAAGTCTATTTTGGAAAGCACCTAA | |||||
| PCR | msp2 | msp2-3f | CCAGCGTTTAGCAAGATAAGAG | 334 | [ | |
| msp2-3r | GMCCAGTAACAACATCATAAGC | |||||
| TBEv | rRT-PCR | 3' non-coding region | F-TBE 1 | GGGCGGTTCTTGTTCTCC | 67 | [ |
| R-TBE 1 | ACACATCACCTCCTTGTCAGACT | |||||
| TBE-Probe-WT | TGAGCCACCATCACCCAGACACA | |||||
| TBEv | nested PCR | non-structural protein NS5 | FSM-1 | GAGGCTGAACAACTGCACGA | 357 | [ |
| FSM-2 | GAACACGTCCATTCCTGATCT | |||||
| non-structural protein NS5 | FSM-1i | ACGGAACGTGACAAGGCTAG | 251 | |||
| FSM-2i | GCTTGTTACCATCTTTGGAG | |||||
| PCR | citrate synthase | RpCS.877p | GGGGGCCTGCTCACGGCGG | 381 | [ | |
| RpCS1258n | ATTGCAAAAAGTACAGTGAACA | |||||
| PCR | groEL | NM-128s | AACAGGTGAAACACTAGATAAGTCCAT | 1024 | [ | |
| NM-1152as | TTCTACTTTGAACATTTGAAGAATTACTAT | |||||
| Babesia/Theileria | PCR | 18S rRNA | RLB-F2 | GACACAGGGAGGTAGTGACAA | 400 | [ |
| RLB-R2 | CTAAGAATTTCACCTCTGACAGT |
Primers and UPL used for genospecies identification of Borrelia burgdorferi s.l. in co-infected ticks using real time PCR assays
| Amplicon | ||||
|---|---|---|---|---|
| OspAa | TCTTGAAGGAACTTTAACTGCTGA | #119 | ||
| OspA | GACTCCGCAGGTACCAATTT | #98 | ||
| Flab | TCTGCTATGATTATGCCACCA CCTTTGCCTAAGAATTGATTACCA | #2 | ||
| Fla | CCAAATGCACATGTTGTCAAA | #132 |
aOspA: Outer surface protein A gene; bFla: flagellin gene; cbp: base pairs
Pathogens and their prevalence (P) detected in 193 adult Ixodes ricinus from 2006 to 2008 in north-eastern Italy, permanent and temporary sites positives and year of detection.
| Pathogens [accession numbers] | P | year of detection | |||||
|---|---|---|---|---|---|---|---|
| 2006 | 2007 | 2008 | |||||
| n = 43 | n = 83 | n = 67 | |||||
| 34 | 17.6% | ||||||
| | 12 | 6.2% | 2 | 3 | x | x | x |
| | 10 | 5.2% | 2 | 2 | x | x | x |
| | 8 | 4.1% | 1 | 3 | x | x | - |
| B. burgdorferi s.s. [ | 6 | 3.1% | 2 | 3 | x | x | x |
| 25 | 13.1% | 4 | 5 | x | x | x | |
| Ca. | 20 | 10.5% | 3 | 3 | x | x | x |
| 7 | 3.7% | - | 3 | x | - | - | |
| TBE flavivirus [ | 4 | 2.1% | 1 | - | - | x | - |
| 3 | 1.5% | 2 | 1 | - | x | - | |
| 2 | 1.0% | 2 | - | - | x | - | |
| 1 | 0.5% | 1 | - | - | - | x | |
GenBank accession numbers are also reported.
* adult tested 191
Pathogen association in co-infected ticks
| Pathogen associations | |
|---|---|
| double co-infection | |
| 3 | |
| 3 | |
| 1 | |
| 1 | |
| 1 | |
| 1 | |
| 1 | |
| 1 | |
| 1 | TBE- |
| triple co-infection | |
| 1 | TBE- |
| 1 | |
| 1 | |
| 1 | |
Pathogens prevalence according to province of origin (permanent and temporary sites all over the three years) and significant differences*
| provinces | Pordenone | Udine | Treviso | Vicenza | Verona | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Lyme agents: | 14 | 29.8a | 8 | 13.3a | 10 | 15.6 | - | - | 2 | 16.7 |
| | 3 | 6.4 | 2 | 3.3 | 5 | 7.8 | - | - | 2 | 16.7 |
| | 8 | 17.0b | 2 | 3.3b | - | - | - | - | - | - |
| | 2 | 4.3 | 3 | 5.0 | 3 | 4.7 | - | - | - | - |
| | 2 | 4.3 | 2 | 3.3 | 2 | 3.1 | - | - | - | - |
| 6 | 13.0 | 6 | 10.0 | 10 | 15.6 | 1 | 10.0 | 2 | 16.7 | |
| 9 | 19.6 | 5 | 8.3 | 6 | 9.4 | - | - | - | - | |
| 6 | 13.0c | 1 | 1.7c | - | - | - | - | - | - | |
| TBEv | - | - | 4 | 6.7 | - | - | - | - | - | - |
| - | - | 2 | 3.3 | 1 | 1.6 | - | - | - | - | |
| - | - | 1 | 1.7 | 1 | 1.6 | - | - | - | - | |
| - | - | - | - | 1 | 1.6 | - | - | - | - | |
* Equal letter corresponds to significant difference (lower case = p < 0.05; upper case = p < 0.01)
Pathogen prevalence according to the initial screening (all adults) and different sampling strategies (A, B, C) and prevalence difference among each strategy compared to the initial screening (Δ)
| Pathogens | all adults | female ticks | Δ | all ticks | Δ | female ticks | Δ | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 34 | 17.6 | 23 | 24.2 | 19 | 15.0 | 14 | 20.9 | ||||
| | 12 | 6.2 | 6 | 6.3 | 6 | 4.7 | 4 | 6.0 | |||
| | 10 | 5.2 | 7 | 7.4 | 4 | 3.1 | 2 | 3.0 | |||
| | 8 | 4.1 | 7 | 7.4 | 7 | 5.5 | 6 | 9.0 | |||
| | 6 | 3.1 | 5 | 5.3 | 4 | 3.1 | 4 | 6.0 | |||
| 25 | 13.1 | 18 | 19.1 | 20 | 15.7 | 14 | 21.2 | ||||
| 20 | 10.5 | 8 | 8.5 | 11 | 8.7 | 5 | 7.6 | ||||
| 7 | 3.7 | 3 | 3.2 | 2 | 1.6 | 1 | 1.5 | ||||
| TBEv | 4 | 2.1 | 4 | 4.2 | 4 | 3.1 | 4 | 6.0 | |||
| 3 | 1.6 | 3 | 3.2 | 3 | 2.4 | 3 | 4.5 | ||||
| 2 | 1.0 | 0 | 0.0 | 2 | 1.6 | 0 | 0.0 | ||||
| 1 | 0.5 | 0 | 0.0 | 1 | 0.8 | 0 | 0.0 | ||||
Estimated costs (€) of different tick sampling strategies and pathogen screening for a three year study
| n | € | n | € | n | € | n | € | |
|---|---|---|---|---|---|---|---|---|
| DNA/RNA extraction (x2) | 388 | 3706 | 190 | 2438 | 254 | 1824 | 134 | 1286 |
| biomolecular analyses | 1018 | 7010 | 510 | 3516 | 669 | 4608 | 359 | 1634 |
| sequencing | 101 | 1818 | 59 | 1062 | 81 | 1458 | 55 | 990 |
| draggings (travel costs) | 146 | 24000 | 146 | 24000 | 71 | 9000 | 71 | 9000 |
| Staff | ||||||||
| 1 grant (sampling) | 96 | 7234 | 96 | 7234 | 36 | 2713 | 36 | 2713 |
| 1 entomologist | 32 | 4874 | 16 | 2399 | 21 | 3207 | 11 | 1692 |
| 1 technician | 64 | 7932 | 32 | 3905 | 42 | 5220 | 22 | 2754 |
| 1 biotechnologist | 112 | 26507 | 56 | 13277 | 75 | 17758 | 41 | 9697 |
Pros and cons of strategies A, B, and C in terms of results and costs
| Strategies description | PROS | CONS |
|---|---|---|
| Good general pathogen detection | No detection of sporadic | |
| Excellent pathogen detection in | Medium efficiency in identifying | |
| Detection of sporadic pathogens | ||
| Good general pathogen detection | Low efficiency of pathogen | |