Literature DB >> 22452532

Exploring the solid-liquid phase change of an adapted Dzugutov model using generalized replica exchange method.

Qing Lu1, Jaegil Kim, John E Straub.   

Abstract

The generalized replica exchange method (gREM) is applied to simulate a solid-liquid phase change in an adapted Dzugutov model system. The idea of gREM is to incorporate the merit of sampling from a generalized ensemble into the replica exchange paradigm. The generalized ensemble weights are determined from effective temperatures tailored for this system, through an inverse mapping strategy. The ordered and disordered phases are smoothly joined together through a succession of unimodal energy distributions, providing a continuous transformation from an isotropic liquid into an amorphous solid phase under the given condition. The phase change temperature is determined by evaluation of various thermodynamic and structural order parameters. The increasing tendency for icosahedral local order under cooling is quantified using bond order parameters. The ergodic measure is used to demonstrate the advantage of gREM over the traditional temperature-based REM in sampling the phase change region.

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Year:  2012        PMID: 22452532     DOI: 10.1021/jp300406c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  1 in total

1.  Hamiltonian Switch Metropolis Monte Carlo Simulations for Improved Conformational Sampling of Intrinsically Disordered Regions Tethered to Ordered Domains of Proteins.

Authors:  Anuradha Mittal; Nicholas Lyle; Tyler S Harmon; Rohit V Pappu
Journal:  J Chem Theory Comput       Date:  2014-06-03       Impact factor: 6.006

  1 in total

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