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Literature DB >> 22451928

Designing orthogonal signaling pathways: how to fit in with the surroundings.

John Karanicolas¹.

Abstract

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Year: 2012 PMID： 22451928 PMCID： PMC3325707 DOI： 10.1073/pnas.1202624109

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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10 in total

1. Optimization of specificity in a cellular protein interaction network by negative selection.

Authors: Ali Zarrinpar; Sang-Hyun Park; Wendell A Lim
Journal: Nature Date: 2003-12-11 Impact factor: 49.962

2. Computational redesign of protein-protein interaction specificity.

Authors: Tanja Kortemme; Lukasz A Joachimiak; Alex N Bullock; Aaron D Schuler; Barry L Stoddard; David Baker
Journal: Nat Struct Mol Biol Date: 2004-03-21 Impact factor: 15.369

3. Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.

Authors: Gregory T Kapp; Sen Liu; Amelie Stein; Derek T Wong; Attila Reményi; Brian J Yeh; James S Fraser; Jack Taunton; Wendell A Lim; Tanja Kortemme
Journal: Proc Natl Acad Sci U S A Date: 2012-03-07 Impact factor: 11.205

4. Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase.

Authors: Angela P Won; Joan E Garbarino; Wendell A Lim
Journal: Proc Natl Acad Sci U S A Date: 2011-05-31 Impact factor: 11.205

5. A de novo protein binding pair by computational design and directed evolution.

Authors: John Karanicolas; Jacob E Corn; Irwin Chen; Lukasz A Joachimiak; Orly Dym; Sun H Peck; Shira Albeck; Tamar Unger; Wenxin Hu; Gaohua Liu; Scott Delbecq; Gaetano T Montelione; Clint P Spiegel; David R Liu; David Baker
Journal: Mol Cell Date: 2011-03-31 Impact factor: 17.970

1 in total

Review 1. D-Xylose Sensing in Saccharomyces cerevisiae: Insights from D-Glucose Signaling and Native D-Xylose Utilizers.

Authors: Daniel P Brink; Celina Borgström; Viktor C Persson; Karen Ofuji Osiro; Marie F Gorwa-Grauslund
Journal: Int J Mol Sci Date: 2021-11-17 Impact factor: 5.923

1 in total

Designing orthogonal signaling pathways: how to fit in with the surroundings.

1. Optimization of specificity in a cellular protein interaction network by negative selection.

2. Computational redesign of protein-protein interaction specificity.

3. Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.

4. Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase.

5. A de novo protein binding pair by computational design and directed evolution.

6. Computed structures of point deletion mutants and their enzymatic activities.

7. Building and analyzing protein interactome networks by cross-species comparisons.

8. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.

9. SMART 7: recent updates to the protein domain annotation resource.

10. Design of protein-interaction specificity gives selective bZIP-binding peptides.

Review 1. D-Xylose Sensing in Saccharomyces cerevisiae: Insights from D-Glucose Signaling and Native D-Xylose Utilizers.