Literature DB >> 22451105

Structural basis for nitrous oxide generation by bacterial nitric oxide reductases.

Yoshitsugu Shiro1, Hiroshi Sugimoto, Takehiko Tosha, Shingo Nagano, Tomoya Hino.   

Abstract

The crystal structure of the bacterial nitric oxide reductase (cNOR) from Pseudomonas aeruginosa is reported. Its overall structure is similar to those of the main subunit of aerobic and micro-aerobic cytochrome oxidases (COXs), in agreement with the hypothesis that all these enzymes are members of the haem-copper oxidase superfamily. However, substantial structural differences between cNOR and COX are observed in the catalytic centre and the delivery pathway of the catalytic protons, which should be reflected in functional differences between these respiratory enzymes. On the basis of the cNOR structure, we propose a possible reaction mechanism of nitric oxide reduction to nitrous oxide as a working hypothesis.

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Year:  2012        PMID: 22451105      PMCID: PMC3306621          DOI: 10.1098/rstb.2011.0310

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  53 in total

Review 1.  The bacterial respiratory nitric oxide reductase.

Authors:  Nicholas J Watmough; Sarah J Field; Ross J L Hughes; David J Richardson
Journal:  Biochem Soc Trans       Date:  2009-04       Impact factor: 5.407

2.  Proton and electron pathways in the bacterial nitric oxide reductase.

Authors:  Janneke H M Hendriks; Audrius Jasaitis; Matti Saraste; Michael I Verkhovsky
Journal:  Biochemistry       Date:  2002-02-19       Impact factor: 3.162

3.  Structural basis of biological N2O generation by bacterial nitric oxide reductase.

Authors:  Tomoya Hino; Yushi Matsumoto; Shingo Nagano; Hiroshi Sugimoto; Yoshihiro Fukumori; Takeshi Murata; So Iwata; Yoshitsugu Shiro
Journal:  Science       Date:  2010-11-25       Impact factor: 47.728

4.  The nitric oxide reductase of Paracoccus denitrificans.

Authors:  G J Carr; S J Ferguson
Journal:  Biochem J       Date:  1990-07-15       Impact factor: 3.857

5.  Purification and characterization of the MQH2:NO oxidoreductase from the hyperthermophilic archaeon Pyrobaculum aerophilum.

Authors:  Simon de Vries; Marc J F Strampraad; Shen Lu; Pierre Moënne-Loccoz; Imke Schröder
Journal:  J Biol Chem       Date:  2003-06-10       Impact factor: 5.157

6.  Formation of the N-N bond from nitric oxide by a membrane-bound cytochrome bc complex of nitrate-respiring (denitrifying) Pseudomonas stutzeri.

Authors:  B Heiss; K Frunzke; W G Zumft
Journal:  J Bacteriol       Date:  1989-06       Impact factor: 3.490

7.  The MCD and EPR of the heme centers of nitric oxide reductase from Pseudomonas stutzeri: evidence that the enzyme is structurally related to the heme-copper oxidases.

Authors:  M R Cheesman; W G Zumft; A J Thomson
Journal:  Biochemistry       Date:  1998-03-17       Impact factor: 3.162

Review 8.  The respiratory nitric oxide reductase (NorBC) from Paracoccus denitrificans.

Authors:  Sarah J Field; Faye H Thorndycroft; Andrey D Matorin; David J Richardson; Nicholas J Watmough
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

9.  A functional nitric oxide reductase model.

Authors:  James P Collman; Ying Yang; Abhishek Dey; Richard A Decréau; Somdatta Ghosh; Takehiro Ohta; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

10.  The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.

Authors:  T Tsukihara; H Aoyama; E Yamashita; T Tomizaki; H Yamaguchi; K Shinzawa-Itoh; R Nakashima; R Yaono; S Yoshikawa
Journal:  Science       Date:  1996-05-24       Impact factor: 47.728

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  17 in total

1.  The nitric-oxide reductase from Paracoccus denitrificans uses a single specific proton pathway.

Authors:  Josy ter Beek; Nils Krause; Joachim Reimann; Peter Lachmann; Pia Ädelroth
Journal:  J Biol Chem       Date:  2013-09-06       Impact factor: 5.157

Review 2.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

3.  Heme redox potentials hold the key to reactivity differences between nitric oxide reductase and heme-copper oxidase.

Authors:  Ambika Bhagi-Damodaran; Julian H Reed; Qianhong Zhu; Yelu Shi; Parisa Hosseinzadeh; Braddock A Sandoval; Kevin A Harnden; Shuyan Wang; Madeline R Sponholtz; Evan N Mirts; Sudharsan Dwaraknath; Yong Zhang; Pierre Moënne-Loccoz; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-25       Impact factor: 11.205

4.  Lewis Acid Activation of the Ferrous Heme-NO Fragment toward the N-N Coupling Reaction with NO To Generate N2O.

Authors:  Erwin G Abucayon; Rahul L Khade; Douglas R Powell; Yong Zhang; George B Richter-Addo
Journal:  J Am Chem Soc       Date:  2018-03-15       Impact factor: 15.419

5.  Spectroscopic and computational study of a nonheme iron nitrosyl center in a biosynthetic model of nitric oxide reductase.

Authors:  Saumen Chakraborty; Julian Reed; Matthew Ross; Mark J Nilges; Igor D Petrik; Soumya Ghosh; Sharon Hammes-Schiffer; J Timothy Sage; Yong Zhang; Charles E Schulz; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-31       Impact factor: 15.336

Review 6.  Biological sources and sinks of nitrous oxide and strategies to mitigate emissions.

Authors:  Andrew J Thomson; Georgios Giannopoulos; Jules Pretty; Elizabeth M Baggs; David J Richardson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-05-05       Impact factor: 6.237

Review 7.  Not Limited to Iron: A Cobalt Heme-NO Model Facilitates N-N Coupling with External NO in the Presence of a Lewis Acid to Generate N2 O.

Authors:  Erwin G Abucayon; Rahul L Khade; Douglas R Powell; Yong Zhang; George B Richter-Addo
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-31       Impact factor: 15.336

8.  Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Authors:  Ambika Bhagi-Damodaran; Igor Petrik; Yi Lu
Journal:  Isr J Chem       Date:  2016-09-16       Impact factor: 3.333

9.  Functional importance of a pair of conserved glutamic acid residues and of Ca(2+) binding in the cbb(3)-type oxygen reductases from Rhodobacter sphaeroides and Vibrio cholerae.

Authors:  Hanlin Ouyang; Huazhi Han; Jung H Roh; James Hemp; Jonathan P Hosler; Robert B Gennis
Journal:  Biochemistry       Date:  2012-09-04       Impact factor: 3.162

10.  Nitrosyl Linkage Isomers: NO Coupling to N2O at a Mononuclear Site.

Authors:  Subrata Kundu; Phan N Phu; Pokhraj Ghosh; Stosh A Kozimor; Jeffery A Bertke; S Chantal E Stieber; Timothy H Warren
Journal:  J Am Chem Soc       Date:  2019-01-16       Impact factor: 15.419

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