Literature DB >> 22448201

Approximation for Cooperative Interactions of a Spatially-Detailed Cardiac Sarcomere Model.

Takumi Washio, Jun-Ichi Okada, Seiryo Sugiura, Toshiaki Hisada.   

Abstract

We developed a novel ordinary differential equation (ODE) model, which produced results that correlated well with the Monte Carlo (MC) simulation when applied to a spatially-detailed model of the cardiac sarcomere. Configuration of the novel ODE model was based on the Ising model of myofilaments, with the "co-operative activation" effect introduced to incorporate nearest-neighbor interactions. First, a set of parameters was estimated using arbitrary Ca transient data to reproduce the combinational probability for the states of three consecutive regulatory units, using single unit probabilities for central and neighboring units in the MC simulation. The parameter set thus obtained enabled the calculation of the state transition of each unit using the ODE model with reference to the neighboring states. The present ODE model not only provided good agreement with the MC simulation results but was also capable of reproducing a wide range of experimental results under both steady-state and dynamic conditions including shortening twitch. The simulation results suggested that the nearest-neighbor interaction is a reasonable approximation of the cooperativity based on end-to-end interactions. Utilizing the modified ODE model resulted in a reduction in computational costs but maintained spatial integrity and co-operative effects, making it a powerful tool in cardiac modeling.

Entities:  

Year:  2011        PMID: 22448201      PMCID: PMC3291845          DOI: 10.1007/s12195-011-0219-2

Source DB:  PubMed          Journal:  Cell Mol Bioeng        ISSN: 1865-5025            Impact factor:   2.321


  18 in total

Review 1.  Length dependence of active force production in skeletal muscle.

Authors:  D E Rassier; B R MacIntosh; W Herzog
Journal:  J Appl Physiol (1985)       Date:  1999-05

Review 2.  Approaches to modeling crossbridges and calcium-dependent activation in cardiac muscle.

Authors:  John Jeremy Rice; Pieter P de Tombe
Journal:  Prog Biophys Mol Biol       Date:  2004 Jun-Jul       Impact factor: 3.667

3.  Coupling of adjacent tropomyosins enhances cross-bridge-mediated cooperative activation in a markov model of the cardiac thin filament.

Authors:  Stuart G Campbell; Fred V Lionetti; Kenneth S Campbell; Andrew D McCulloch
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

Review 4.  Modelling the mechanical properties of cardiac muscle.

Authors:  P J Hunter; A D McCulloch; H E ter Keurs
Journal:  Prog Biophys Mol Biol       Date:  1998       Impact factor: 3.667

5.  On the theory of muscle contraction: filament extensibility and the development of isometric force and stiffness.

Authors:  S M Mijailovich; J J Fredberg; J P Butler
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Compliant realignment of binding sites in muscle: transient behavior and mechanical tuning.

Authors:  T L Daniel; A C Trimble; P B Chase
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

7.  Uncontrolled sarcomere shortening increases intracellular Ca2+ transient in rat cardiac trabeculae.

Authors:  P M Janssen; P P de Tombe
Journal:  Am J Physiol       Date:  1997-04

8.  Comparison between the sarcomere length-force relations of intact and skinned trabeculae from rat right ventricle. Influence of calcium concentrations on these relations.

Authors:  J C Kentish; H E ter Keurs; L Ricciardi; J J Bucx; M I Noble
Journal:  Circ Res       Date:  1986-06       Impact factor: 17.367

9.  Cooperative [Ca²+]-dependent regulation of the rate of myosin binding to actin: solution data and the tropomyosin chain model.

Authors:  Michael Geeves; Hugh Griffiths; Srboljub Mijailovich; David Smith
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

10.  Rate constant of muscle force redevelopment reflects cooperative activation as well as cross-bridge kinetics.

Authors:  K Campbell
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

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  8 in total

1.  Slowed Dynamics of Thin Filament Regulatory Units Reduces Ca2+-Sensitivity of Cardiac Biomechanical Function.

Authors:  Campion K P Loong; Aya K Takeda; Myriam A Badr; Jordan S Rogers; P Bryant Chase
Journal:  Cell Mol Bioeng       Date:  2013-06-01       Impact factor: 2.321

2.  UT-Heart: A Finite Element Model Designed for the Multiscale and Multiphysics Integration of our Knowledge on the Human Heart.

Authors:  Seiryo Sugiura; Jun-Ichi Okada; Takumi Washio; Toshiaki Hisada
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Cardiac tissue structure, properties, and performance: a materials science perspective.

Authors:  Mark Golob; Richard L Moss; Naomi C Chesler
Journal:  Ann Biomed Eng       Date:  2014-08-01       Impact factor: 3.934

Review 4.  Insights and Challenges of Multi-Scale Modeling of Sarcomere Mechanics in cTn and Tm DCM Mutants-Genotype to Cellular Phenotype.

Authors:  Sukriti Dewan; Kimberly J McCabe; Michael Regnier; Andrew D McCulloch
Journal:  Front Physiol       Date:  2017-03-14       Impact factor: 4.566

5.  Patient-specific heart simulation can identify non-responders to cardiac resynchronization therapy.

Authors:  Akihiro Isotani; Kazunori Yoneda; Takashi Iwamura; Masahiro Watanabe; Jun-Ichi Okada; Takumi Washio; Seiryo Sugiura; Toshiaki Hisada; Kenji Ando
Journal:  Heart Vessels       Date:  2020-03-12       Impact factor: 2.037

6.  Screening system for drug-induced arrhythmogenic risk combining a patch clamp and heart simulator.

Authors:  Jun-Ichi Okada; Takashi Yoshinaga; Junko Kurokawa; Takumi Washio; Tetsushi Furukawa; Kohei Sawada; Seiryo Sugiura; Toshiaki Hisada
Journal:  Sci Adv       Date:  2015-05-01       Impact factor: 14.136

Review 7.  Clinical and pharmacological application of multiscale multiphysics heart simulator, UT-Heart.

Authors:  Jun-Ichi Okada; Takumi Washio; Seiryo Sugiura; Toshiaki Hisada
Journal:  Korean J Physiol Pharmacol       Date:  2019-08-26       Impact factor: 2.016

8.  Biophysically detailed mathematical models of multiscale cardiac active mechanics.

Authors:  Francesco Regazzoni; Luca Dedè; Alfio Quarteroni
Journal:  PLoS Comput Biol       Date:  2020-10-07       Impact factor: 4.475

  8 in total

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