Literature DB >> 22444143

Whole genome studies of Tetrahymena.

Robert S Coyne1, Nicholas A Stover, Wei Miao.   

Abstract

Within the past decade, genomic studies have emerged as essential and highly productive tools to explore the biology of Tetrahymena thermophila. The current major resources, which have been extensively mined by the research community, are the annotated macronuclear genome assembly, transcriptomic data and the databases that house this information. Efforts in progress will soon improve these data sources and expand their scope, including providing annotated micronuclear and comparative genomic sequences. Future studies of Tetrahymena cell and molecular biology, development, physiology, evolution and ecology will benefit greatly from these resources and the advanced genomic technologies they enable. Copyright Â
© 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22444143     DOI: 10.1016/B978-0-12-385967-9.00004-9

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  14 in total

Review 1.  Programmed Genome Rearrangements in the Ciliate Oxytricha.

Authors:  V Talya Yerlici; Laura F Landweber
Journal:  Microbiol Spectr       Date:  2014-12

2.  The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

Authors:  Estienne C Swart; John R Bracht; Vincent Magrini; Patrick Minx; Xiao Chen; Yi Zhou; Jaspreet S Khurana; Aaron D Goldman; Mariusz Nowacki; Klaas Schotanus; Seolkyoung Jung; Robert S Fulton; Amy Ly; Sean McGrath; Kevin Haub; Jessica L Wiggins; Donna Storton; John C Matese; Lance Parsons; Wei-Jen Chang; Michael S Bowen; Nicholas A Stover; Thomas A Jones; Sean R Eddy; Glenn A Herrick; Thomas G Doak; Richard K Wilson; Elaine R Mardis; Laura F Landweber
Journal:  PLoS Biol       Date:  2013-01-29       Impact factor: 8.029

Review 3.  Genomes on the edge: programmed genome instability in ciliates.

Authors:  John R Bracht; Wenwen Fang; Aaron David Goldman; Egor Dolzhenko; Elizabeth M Stein; Laura F Landweber
Journal:  Cell       Date:  2013-01-31       Impact factor: 41.582

4.  <mds_ies_db>: a database of ciliate genome rearrangements.

Authors:  Jonathan Burns; Denys Kukushkin; Kelsi Lindblad; Xiao Chen; Nataša Jonoska; Laura F Landweber
Journal:  Nucleic Acids Res       Date:  2015-11-19       Impact factor: 16.971

5.  Phosphorylation of an HP1-like Protein Regulates Heterochromatin Body Assembly for DNA Elimination.

Authors:  Kensuke Kataoka; Kazufumi Mochizuki
Journal:  Dev Cell       Date:  2015-12-10       Impact factor: 12.270

6.  Selecting one of several mating types through gene segment joining and deletion in Tetrahymena thermophila.

Authors:  Marcella D Cervantes; Eileen P Hamilton; Jie Xiong; Michael J Lawson; Dongxia Yuan; Michalis Hadjithomas; Wei Miao; Eduardo Orias
Journal:  PLoS Biol       Date:  2013-03-26       Impact factor: 8.029

7.  Small-RNA-Mediated Genome-wide trans-Recognition Network in Tetrahymena DNA Elimination.

Authors:  Tomoko Noto; Kensuke Kataoka; Jan H Suhren; Azusa Hayashi; Katrina J Woolcock; Martin A Gorovsky; Kazufumi Mochizuki
Journal:  Mol Cell       Date:  2015-06-18       Impact factor: 17.970

Review 8.  Transposon domestication versus mutualism in ciliate genome rearrangements.

Authors:  Alexander Vogt; Aaron David Goldman; Kazufumi Mochizuki; Laura F Landweber
Journal:  PLoS Genet       Date:  2013-08-01       Impact factor: 5.917

9.  A domesticated PiggyBac transposase interacts with heterochromatin and catalyzes reproducible DNA elimination in Tetrahymena.

Authors:  Alexander Vogt; Kazufumi Mochizuki
Journal:  PLoS Genet       Date:  2013-12-12       Impact factor: 5.917

10.  DNA-guided establishment of nucleosome patterns within coding regions of a eukaryotic genome.

Authors:  Leslie Y Beh; Manuel M Müller; Tom W Muir; Noam Kaplan; Laura F Landweber
Journal:  Genome Res       Date:  2015-09-01       Impact factor: 9.043

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