Literature DB >> 22443932

Toward the single-hour high-quality genome.

Patrik L Ståhl1, Joakim Lundeberg.   

Abstract

Today, resequencing of a human genome can be performed in approximately a week using a single instrument. Thanks to a steady logarithmic rate of increase in performance for DNA sequencing platforms over the past seven years, DNA sequencing is one of the fastest developing technology fields. As the process becomes faster, it opens up possibilities within health care, diagnostics, and entirely new fields of research. Immediate genetic characterization of contagious outbreaks has been exemplified, and with such applications for the direct benefit of human health, expectations of future sensitive, rapid, high-throughput, and cost-effective technologies are steadily growing. Simultaneously, some of the limitations of a rapidly growing field have become apparent, and questions regarding the quality of some of the data deposited into databases have been raised. A human genome sequenced in only an hour is likely to become a reality in the future, but its definition may not be as certain.

Entities:  

Mesh:

Year:  2012        PMID: 22443932     DOI: 10.1146/annurev-biochem-060410-094158

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  11 in total

Review 1.  Signal transduction: From the atomic age to the post-genomic era.

Authors:  Jeremy Thorner; Tony Hunter; Lewis C Cantley; Richard Sever
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-30       Impact factor: 10.005

2.  The Sequencing Bead Array (SBA), a next-generation digital suspension array.

Authors:  Michael S Akhras; Erik Pettersson; Lisa Diamond; Magnus Unemo; Jennifer Okamoto; Ronald W Davis; Nader Pourmand
Journal:  PLoS One       Date:  2013-10-07       Impact factor: 3.240

3.  Assessment of whole genome amplification for sequence capture and massively parallel sequencing.

Authors:  Johanna Hasmats; Henrik Gréen; Cedric Orear; Pierre Validire; Mikael Huss; Max Käller; Joakim Lundeberg
Journal:  PLoS One       Date:  2014-01-07       Impact factor: 3.240

4.  Eliciting the Functional Taxonomy from protein annotations and taxa.

Authors:  Marco Falda; Enrico Lavezzo; Paolo Fontana; Luca Bianco; Michele Berselli; Elide Formentin; Stefano Toppo
Journal:  Sci Rep       Date:  2016-08-18       Impact factor: 4.379

5.  Beginner's guide to comparative bacterial genome analysis using next-generation sequence data.

Authors:  David J Edwards; Kathryn E Holt
Journal:  Microb Inform Exp       Date:  2013-04-10

6.  Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing.

Authors:  Sverker Lundin; Joel Gruselius; Björn Nystedt; Preben Lexow; Max Käller; Joakim Lundeberg
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

7.  Biases in the experimental annotations of protein function and their effect on our understanding of protein function space.

Authors:  Alexandra M Schnoes; David C Ream; Alexander W Thorman; Patricia C Babbitt; Iddo Friedberg
Journal:  PLoS Comput Biol       Date:  2013-05-30       Impact factor: 4.475

8.  TagGD: fast and accurate software for DNA Tag generation and demultiplexing.

Authors:  Paul Igor Costea; Joakim Lundeberg; Pelin Akan
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

Review 9.  Standardization of human stem cell pluripotency using bioinformatics.

Authors:  Michael W Nestor; Scott A Noggle
Journal:  Stem Cell Res Ther       Date:  2013-04-25       Impact factor: 6.832

10.  Targeted Amplicon Sequencing for Single-Nucleotide-Polymorphism Genotyping of Attaching and Effacing Escherichia coli O26:H11 Cattle Strains via a High-Throughput Library Preparation Technique.

Authors:  Sarah A Ison; Sabine Delannoy; Marie Bugarel; Tiruvoor G Nagaraja; David G Renter; Henk C den Bakker; Kendra K Nightingale; Patrick Fach; Guy H Loneragan
Journal:  Appl Environ Microbiol       Date:  2015-11-13       Impact factor: 4.792

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