Literature DB >> 22442217

Structure of a bacterial cytoplasmic cyclophilin A in complex with a tetrapeptide.

Elias Christoforides1, Maria Dimou, Panagiotis Katinakis, Kostas Bethanis, Michael Karpusas.   

Abstract

Cyclophilins constitute a class of peptidyl-prolyl isomerases which participate in processes related to protein folding, signalling and chaperoning. The crystal structure of the cytoplasmic cyclophilin A (CyPA) from the bacterium Azotobacter vinelandii complexed with a synthetic tetrapeptide was determined by molecular replacement at 2 resolution. The proline in the tetrapeptide is observed to adopt the cis-isomer conformation. Comparisons of this structure with other CyPA structures provide insights into the conformational variability, effects of peptide binding and structure-function relationships of this enzyme.
© 2012 International Union of Crystallography

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Year:  2012        PMID: 22442217      PMCID: PMC3310525          DOI: 10.1107/S1744309112000188

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  31 in total

1.  An explanation for the rare occurrence of cis peptide units in proteins and polypeptides.

Authors:  G N Ramachandran; A K Mitra
Journal:  J Mol Biol       Date:  1976-10-15       Impact factor: 5.469

2.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 3.  Conformation of polypeptides and proteins.

Authors:  G N Ramachandran; V Sasisekharan
Journal:  Adv Protein Chem       Date:  1968

4.  Crystal structure of cytoplasmic Escherichia coli peptidyl-prolyl isomerase: evidence for decreased mobility of loops upon complexation.

Authors:  K J Edwards; D L Ollis; N E Dixon
Journal:  J Mol Biol       Date:  1997-08-15       Impact factor: 5.469

5.  Specific incorporation of cyclophilin A into HIV-1 virions.

Authors:  E K Franke; H E Yuan; J Luban
Journal:  Nature       Date:  1994-11-24       Impact factor: 49.962

6.  Structural insights into the catalytic mechanism of cyclophilin A.

Authors:  Bruce R Howard; Felix F Vajdos; Su Li; Wesley I Sundquist; Christopher P Hill
Journal:  Nat Struct Biol       Date:  2003-06

7.  Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes.

Authors:  João C Setubal; Patricia dos Santos; Barry S Goldman; Helga Ertesvåg; Guadelupe Espin; Luis M Rubio; Svein Valla; Nalvo F Almeida; Divya Balasubramanian; Lindsey Cromes; Leonardo Curatti; Zijin Du; Eric Godsy; Brad Goodner; Kaitlyn Hellner-Burris; José A Hernandez; Katherine Houmiel; Juan Imperial; Christina Kennedy; Timothy J Larson; Phil Latreille; Lauren S Ligon; Jing Lu; Mali Maerk; Nancy M Miller; Stacie Norton; Ina P O'Carroll; Ian Paulsen; Estella C Raulfs; Rebecca Roemer; James Rosser; Daniel Segura; Steve Slater; Shawn L Stricklin; David J Studholme; Jian Sun; Carlos J Viana; Erik Wallin; Baomin Wang; Cathy Wheeler; Huijun Zhu; Dennis R Dean; Ray Dixon; Derek Wood
Journal:  J Bacteriol       Date:  2009-05-08       Impact factor: 3.490

8.  The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer.

Authors:  M Konno; M Ito; T Hayano; N Takahashi
Journal:  J Mol Biol       Date:  1996-03-15       Impact factor: 5.469

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  3 in total

Review 1.  Microbial cyclophilins: specialized functions in virulence and beyond.

Authors:  Maria Dimou; Anastasia Venieraki; Panagiotis Katinakis
Journal:  World J Microbiol Biotechnol       Date:  2017-08-08       Impact factor: 3.312

2.  Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.

Authors:  Lucila Andrea Acevedo; Jeahoo Kwon; Linda K Nicholson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-29       Impact factor: 11.205

3.  Enzyme activity and structural features of three single-domain phloem cyclophilins from Brassica napus.

Authors:  Patrizia Hanhart; Sven Falke; Marcel Garbe; Victoria Rose; Melanie Thieß; Christian Betzel; Julia Kehr
Journal:  Sci Rep       Date:  2019-06-27       Impact factor: 4.379

  3 in total

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