Literature DB >> 22442037

Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming.

Heike Berndt1, Christiane Harnisch, Christiane Rammelt, Nadine Stöhr, Anne Zirkel, Juliane C Dohm, Heinz Himmelbauer, Joao-Paulo Tavanez, Stefan Hüttelmaier, Elmar Wahle.   

Abstract

Small nucleolar and small Cajal body RNAs (snoRNAs and scaRNAs) of the H/ACA box and C/D box type are generated by exonucleolytic shortening of longer precursors. Removal of the last few nucleotides at the 3' end is known to be a distinct step. We report that, in human cells, knock-down of the poly(A) specific ribonuclease (PARN), previously implicated only in mRNA metabolism, causes the accumulation of oligoadenylated processing intermediates of H/ACA box but not C/D box RNAs. In agreement with a role of PARN in snoRNA and scaRNA processing, the enzyme is concentrated in nucleoli and Cajal bodies. Oligo(A) tails are attached to a short stub of intron sequence remaining beyond the mature 3' end of the snoRNAs. The noncanonical poly(A) polymerase PAPD5 is responsible for addition of the oligo(A) tails. We suggest that deadenylation is coupled to clean 3' end trimming, which might serve to enhance snoRNA stability.

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Year:  2012        PMID: 22442037      PMCID: PMC3334704          DOI: 10.1261/rna.032292.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  71 in total

1.  Depletion of the yeast nuclear exosome subunit Rrp6 results in accumulation of polyadenylated RNAs in a discrete domain within the nucleolus.

Authors:  Tiago Carneiro; Célia Carvalho; José Braga; José Rino; Laura Milligan; David Tollervey; Maria Carmo-Fonseca
Journal:  Mol Cell Biol       Date:  2007-04-02       Impact factor: 4.272

2.  Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

3.  Interaction profiling identifies the human nuclear exosome targeting complex.

Authors:  Michal Lubas; Marianne S Christensen; Maiken S Kristiansen; Michal Domanski; Lasse G Falkenby; Søren Lykke-Andersen; Jens S Andersen; Andrzej Dziembowski; Torben Heick Jensen
Journal:  Mol Cell       Date:  2011-08-19       Impact factor: 17.970

4.  PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif.

Authors:  Christiane Rammelt; Biter Bilen; Mihaela Zavolan; Walter Keller
Journal:  RNA       Date:  2011-07-25       Impact factor: 4.942

5.  Cap-dependent deadenylation of mRNA.

Authors:  E Dehlin; M Wormington; C G Körner; E Wahle
Journal:  EMBO J       Date:  2000-03-01       Impact factor: 11.598

6.  The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.

Authors:  Wiebke Wlotzka; Grzegorz Kudla; Sander Granneman; David Tollervey
Journal:  EMBO J       Date:  2011-04-01       Impact factor: 11.598

7.  The C-terminal region of the exosome-associated protein Rrp47 is specifically required for box C/D small nucleolar RNA 3'-maturation.

Authors:  Joe L Costello; Jonathan A Stead; Monika Feigenbutz; Rebecca M Jones; Phil Mitchell
Journal:  J Biol Chem       Date:  2010-12-06       Impact factor: 5.157

8.  Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.

Authors:  André E Minoche; Juliane C Dohm; Heinz Himmelbauer
Journal:  Genome Biol       Date:  2011-11-08       Impact factor: 13.583

9.  ZBP1 regulates mRNA stability during cellular stress.

Authors:  Nadine Stöhr; Marcell Lederer; Claudia Reinke; Sylke Meyer; Mechthild Hatzfeld; Robert H Singer; Stefan Hüttelmaier
Journal:  J Cell Biol       Date:  2006-11-13       Impact factor: 10.539

Review 10.  The structure and function of small nucleolar ribonucleoproteins.

Authors:  Steve L Reichow; Tomoko Hamma; Adrian R Ferré-D'Amaré; Gabriele Varani
Journal:  Nucleic Acids Res       Date:  2007-02-06       Impact factor: 16.971

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  77 in total

1.  Disruption of Telomerase RNA Maturation Kinetics Precipitates Disease.

Authors:  Caitlin M Roake; Lu Chen; Ananya L Chakravarthy; James E Ferrell; Grazia D Raffa; Steven E Artandi
Journal:  Mol Cell       Date:  2019-03-28       Impact factor: 17.970

Review 2.  New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.

Authors:  Alexander Maxwell Burroughs; Yoshinari Ando; L Aravind
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-12-05       Impact factor: 9.957

Review 3.  Expanding the repertoire of deadenylases.

Authors:  Ilias Skeparnias; Dimitrios Αnastasakis; Athanasios-Nasir Shaukat; Katerina Grafanaki; Constantinos Stathopoulos
Journal:  RNA Biol       Date:  2017-03-07       Impact factor: 4.652

4.  Poly(A)-specific ribonuclease (PARN) mediates 3'-end maturation of the telomerase RNA component.

Authors:  Diane H Moon; Matthew Segal; Baris Boyraz; Eva Guinan; Inga Hofmann; Patrick Cahan; Albert K Tai; Suneet Agarwal
Journal:  Nat Genet       Date:  2015-10-19       Impact factor: 38.330

5.  From incomplete penetrance with normal telomere length to severe disease and telomere shortening in a family with monoallelic and biallelic PARN pathogenic variants.

Authors:  Lois M Dodson; Alessandro Baldan; Mikael Nissbeck; Sethu M R Gunja; Penelope E Bonnen; Geraldine Aubert; Sherri Birchansky; Anders Virtanen; Alison A Bertuch
Journal:  Hum Mutat       Date:  2019-09-15       Impact factor: 4.878

6.  Posttranscriptional manipulation of TERC reverses molecular hallmarks of telomere disease.

Authors:  Baris Boyraz; Diane H Moon; Matthew Segal; Maud Z Muosieyiri; Asli Aykanat; Albert K Tai; Patrick Cahan; Suneet Agarwal
Journal:  J Clin Invest       Date:  2016-08-02       Impact factor: 14.808

Review 7.  A tale of non-canonical tails: gene regulation by post-transcriptional RNA tailing.

Authors:  Sha Yu; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2020-06-01       Impact factor: 94.444

Review 8.  Biology and clinical relevance of noncoding sno/scaRNAs.

Authors:  Thuy Cao; Sheeja Rajasingh; Saheli Samanta; Buddhadeb Dawn; Douglas C Bittel; Johnson Rajasingh
Journal:  Trends Cardiovasc Med       Date:  2017-08-12       Impact factor: 6.677

9.  Crystal structure and functional properties of the human CCR4-CAF1 deadenylase complex.

Authors:  Ying Chen; Elena Khazina; Elisa Izaurralde; Oliver Weichenrieder
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

10.  The nucleic acid-binding domain and translational repression activity of a Xenopus terminal uridylyl transferase.

Authors:  Christopher P Lapointe; Marvin Wickens
Journal:  J Biol Chem       Date:  2013-05-24       Impact factor: 5.157

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