Literature DB >> 22436297

Axonal transport analysis using Multitemporal Association Tracking.

Mark R Winter1, Cheng Fang, Gary Banker, Badrinath Roysam, Andrew R Cohen.   

Abstract

Multitemporal Association Tracking (MAT) is a new graph-based method for multitarget tracking in biological applications that reduces the error rate and implementation complexity compared to approaches based on bipartite matching. The data association problem is solved over a window of future detection data using a graph-based cost function that approximates the Bayesian a posteriori association probability. MAT has been applied to hundreds of image sequences, tracking organelle and vesicles to quantify the deficiencies in axonal transport that can accompany neurodegenerative disorders such as Huntington's Disease and Multiple Sclerosis and to quantify changes in transport in response to therapeutic interventions.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22436297      PMCID: PMC3380808          DOI: 10.1504/IJCBDD.2012.045950

Source DB:  PubMed          Journal:  Int J Comput Biol Drug Des        ISSN: 1756-0756


  12 in total

1.  A noniterative greedy algorithm for multiframe point correspondence.

Authors:  Khurram Shafique; Mubarak Shah
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-01       Impact factor: 6.226

2.  Any reasonable cost function can be used for a posteriori probability approximation.

Authors:  M Saerens; P Latinne; C Decaestecker
Journal:  IEEE Trans Neural Netw       Date:  2002

3.  Automatic summarization of changes in biological image sequences using algorithmic information theory.

Authors:  Andrew R Cohen; Christopher S Bjornsson; Sally Temple; Gary Banker; Badrinath Roysam
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2009-08       Impact factor: 6.226

4.  Automated kymograph analysis for profiling axonal transport of secretory granules.

Authors:  Amit Mukherjee; Brian Jenkins; Cheng Fang; Richard J Radke; Gary Banker; Badrinath Roysam
Journal:  Med Image Anal       Date:  2010-12-30       Impact factor: 8.545

5.  Multiple Object Tracking Using K-Shortest Paths Optimization.

Authors:  Jérôme Berclaz; François Fleuret; Engin Türetken; Pascal Fua
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2011-02-04       Impact factor: 6.226

6.  Computational prediction of neural progenitor cell fates.

Authors:  Andrew R Cohen; Francisco L A F Gomes; Badrinath Roysam; Michel Cayouette
Journal:  Nat Methods       Date:  2010-02-07       Impact factor: 28.547

7.  Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing.

Authors:  Mark Winter; Eric Wait; Badrinath Roysam; Susan K Goderie; Rania Ahmed Naguib Ali; Erzsebet Kokovay; Sally Temple; Andrew R Cohen
Journal:  Nat Protoc       Date:  2011-11-17       Impact factor: 13.491

8.  Huntingtin controls neurotrophic support and survival of neurons by enhancing BDNF vesicular transport along microtubules.

Authors:  Laurent R Gauthier; Bénédicte C Charrin; Maria Borrell-Pagès; Jim P Dompierre; Hélène Rangone; Fabrice P Cordelières; Jan De Mey; Marcy E MacDonald; Volkmar Lessmann; Sandrine Humbert; Frédéric Saudou
Journal:  Cell       Date:  2004-07-09       Impact factor: 41.582

9.  Dynactin is required for coordinated bidirectional motility, but not for dynein membrane attachment.

Authors:  Marjan Haghnia; Valeria Cavalli; Sameer B Shah; Kristina Schimmelpfeng; Richard Brusch; Ge Yang; Cheryl Herrera; Aaron Pilling; Lawrence S B Goldstein
Journal:  Mol Biol Cell       Date:  2007-03-14       Impact factor: 4.138

10.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

View more
  19 in total

1.  Normalized Compression Distance of Multisets with Applications.

Authors:  Andrew R Cohen; Paul M B Vitányi
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-08       Impact factor: 6.226

2.  LEVER: software tools for segmentation, tracking and lineaging of proliferating cells.

Authors:  Mark Winter; Walter Mankowski; Eric Wait; Sally Temple; Andrew R Cohen
Journal:  Bioinformatics       Date:  2016-07-16       Impact factor: 6.937

3.  Automated Measurement of Cobblestone Morphology for Characterizing Stem Cell Derived Retinal Pigment Epithelial Cell Cultures.

Authors:  Rohini Joshi; Walter Mankowski; Mark Winter; Janmeet S Saini; Timothy A Blenkinsop; Jeffrey H Stern; Sally Temple; Andrew R Cohen
Journal:  J Ocul Pharmacol Ther       Date:  2016-05-18       Impact factor: 2.671

4.  Measuring Process Dynamics and Nuclear Migration for Clones of Neural Progenitor Cells.

Authors:  Edgar Cardenas De La Hoz; Mark R Winter; Maria Apostolopoulou; Sally Temple; Andrew R Cohen
Journal:  Comput Vis ECCV       Date:  2016-09-18

5.  Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing.

Authors:  Mark Winter; Eric Wait; Badrinath Roysam; Susan K Goderie; Rania Ahmed Naguib Ali; Erzsebet Kokovay; Sally Temple; Andrew R Cohen
Journal:  Nat Protoc       Date:  2011-11-17       Impact factor: 13.491

6.  Segmentation of occluded hematopoietic stem cells from tracking.

Authors:  Walter C Mankowski; Mark R Winter; Eric Wait; Mels Lodder; Ton Schumacher; Shalin H Naik; Andrew R Cohen
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

7.  Automated segmentation and tracking of mitochondria in live-cell time-lapse images.

Authors:  Austin E Y T Lefebvre; Dennis Ma; Kai Kessenbrock; Devon A Lawson; Michelle A Digman
Journal:  Nat Methods       Date:  2021-08-19       Impact factor: 28.547

8.  A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.

Authors:  Amber L Jolly; Chi-Hao Luan; Brendon E Dusel; Sara F Dunne; Michael Winding; Vishrut J Dixit; Chloe Robins; Jennifer L Saluk; David J Logan; Anne E Carpenter; Manu Sharma; Deborah Dean; Andrew R Cohen; Vladimir I Gelfand
Journal:  Cell Rep       Date:  2016-01-07       Impact factor: 9.423

9.  Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments.

Authors:  Philippe Roudot; Khuloud Jaqaman; Charles Kervrann; Gaudenz Danuser
Journal:  IEEE Trans Image Process       Date:  2017-11       Impact factor: 10.856

10.  Syntaphilin Ubiquitination Regulates Mitochondrial Dynamics and Tumor Cell Movements.

Authors:  Jae Ho Seo; Ekta Agarwal; Kelly G Bryant; M Cecilia Caino; Eui Tae Kim; Andrew V Kossenkov; Hsin-Yao Tang; Lucia R Languino; Dmitry I Gabrilovich; Andrew R Cohen; David W Speicher; Dario C Altieri
Journal:  Cancer Res       Date:  2018-06-13       Impact factor: 12.701

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.