Literature DB >> 22435808

DNA structure, nucleosome placement and chromatin remodelling: a perspective.

Andrew A Travers1, Cédric Vaillant, Alain Arneodo, Georgi Muskhelishvili.   

Abstract

A major question in chromatin biology is to what extent the sequence of DNA directly determines the genetic and chromatin organization of a eukaryotic genome? We consider two aspects to this question: the DNA sequence-specified positioning of nucleosomes and the determination of NDRs (nucleosome-depleted regions) or barriers. We argue that, in budding yeast, while DNA sequence-specified nucleosome positioning may contribute to positions flanking the regions lacking nucleosomes, DNA thermodynamic stability is a major component determinant of the genetic organization of this organism.

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Year:  2012        PMID： 22435808     DOI： 10.1042/BST20110757

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN： 0300-5127            Impact factor:   5.407


  11 in total

Review 1.  Epigenetic susceptibility factors for prostate cancer with aging.

Authors:  N A Damaschke; B Yang; S Bhusari; J P Svaren; D F Jarrard
Journal:  Prostate       Date:  2013-09-02       Impact factor: 4.104

Review 2.  Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information.

Authors:  Georgi Muskhelishvili; Andrew Travers
Journal:  Cell Mol Life Sci       Date:  2013-06-15       Impact factor: 9.261

Review 3.  Functional roles of nucleosome stability and dynamics.

Authors:  Răzvan V Chereji; Alexandre V Morozov
Journal:  Brief Funct Genomics       Date:  2014-09-30       Impact factor: 4.241

Review 4.  Epigenetic mechanisms and models in the origins of asthma.

Authors:  Wilfried Karmaus; Ali H Ziyab; Todd Everson; John W Holloway
Journal:  Curr Opin Allergy Clin Immunol       Date:  2013-02

5.  Androgen-induced Epigenetic Profiles of Polycomb and Trithorax Genes in Prostate Cancer Cells.

Authors:  Songping Wang; Krishma Tailor; Bernard Kwabi-Addo
Journal:  Anticancer Res       Date:  2020-05       Impact factor: 2.480

6.  Global remodeling of nucleosome positions in C. elegans.

Authors:  George Locke; Devorah Haberman; Steven M Johnson; Alexandre V Morozov
Journal:  BMC Genomics       Date:  2013-04-26       Impact factor: 3.969

Review 7.  Making the bend: DNA tertiary structure and protein-DNA interactions.

Authors:  Sabrina Harteis; Sabine Schneider
Journal:  Int J Mol Sci       Date:  2014-07-14       Impact factor: 5.923

8.  Genome wide nucleosome mapping for HSV-1 shows nucleosomes are deposited at preferred positions during lytic infection.

Authors:  Jaewook Oh; Iryna F Sanders; Eric Z Chen; Hongzhe Li; John W Tobias; R Benjamin Isett; Sindura Penubarthi; Hao Sun; Don A Baldwin; Nigel W Fraser
Journal:  PLoS One       Date:  2015-02-24       Impact factor: 3.240

9.  Evidence of selection for an accessible nucleosomal array in human.

Authors:  Guénola Drillon; Benjamin Audit; Françoise Argoul; Alain Arneodo
Journal:  BMC Genomics       Date:  2016-07-29       Impact factor: 3.969

Review 10.  DNA thermodynamics shape chromosome organization and topology.

Authors:  Andrew A Travers; Georgi Muskhelishvili
Journal:  Biochem Soc Trans       Date:  2013-04       Impact factor: 5.407
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