Literature DB >> 22434500

Effects of point mutations on protein structure are nonexponentially distributed.

Tomasz Arodź1, Przemysław M Płonka.   

Abstract

Inspection of structure changes in proteins borne by altering their sequences brings understanding of physics, functioning and evolution of existing proteins, and helps engineer modified ones. On single amino acid substitutions, the most frequent mutation type, shifts in backbone conformation are typically small, raising doubts if and how such minor modifications could drive evolutionary divergence. Here, we report that the distribution of magnitudes of structure change on such substitutions is heavy-tailed--whereas protein structures are robust to most substitutions, changes much larger than average occur with raised odds compared to what would be expected for exponential distribution with the same mean. This nonexponential behavior allows for reconciling the apparent contradiction between the observed conservation of protein structures and the substantial evolutionary plasticity implied in their diversity. The presence of the heavy tail in the distribution promotes structure divergence, facilitating exploration of new functionality, and conformations within folds, as well as exploration of structure space for new folds.
Copyright © 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 22434500     DOI: 10.1002/prot.24073

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  4 in total

1.  Impact of genetic variation on three dimensional structure and function of proteins.

Authors:  Roshni Bhattacharya; Peter W Rose; Stephen K Burley; Andreas Prlić
Journal:  PLoS One       Date:  2017-03-15       Impact factor: 3.240

2.  Functional characterization of 3D protein structures informed by human genetic diversity.

Authors:  Michael Hicks; Istvan Bartha; Julia di Iulio; J Craig Venter; Amalio Telenti
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-15       Impact factor: 11.205

3.  Ribosome Evolution and Structural Capacitance.

Authors:  Ashley M Buckle; Malcolm Buckle
Journal:  Front Mol Biosci       Date:  2019-11-14

4.  Understanding protein structural changes for oncogenic missense variants.

Authors:  Rolando Hernandez; Julio C Facelli
Journal:  Heliyon       Date:  2021-01-27
  4 in total

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