Literature DB >> 22430197

Fifteen non-CODIS autosomal short tandem repeat loci multiplex data from nine population groups living in Taiwan.

Hsiao-Lin Hwa1, Yih-Yuan Chang, James Chun-I Lee, Chun-Yen Lin, Hsiang-Yi Yin, Li-Hui Tseng, Yi-Ning Su, Tsang-Ming Ko.   

Abstract

The analysis of autosomal short tandem repeat (STR) loci is a powerful tool in forensic genetics. We developed a multiplex system in which 15 non-Combined DNA Index System autosomal STRs (D3S1744, D4S2366, D8S1110, D10S2325, D12S1090, D13S765, D14S608, Penta E, D17S1294, D18S536, D18S1270, D20S470, D21S1437, Penta D, and D22S683) could be amplified in one single polymerase chain reaction. DNA samples from 1,098 unrelated subjects of nine population groups living in Taiwan, including Taiwanese Han, indigenous Taiwanese of Taiwan Island, Tao, mainland Chinese, Filipinos, Thais, Vietnamese, Indonesians, and Caucasians, were collected and analyzed using this system. The distributions of the allelic frequencies and the forensic parameters of each population group were presented. The combined discrimination power and the combined power of exclusion were high in all population groups tested in this study. A multidimensional scaling plot of these nine population groups based on the Reynolds' genetic distances calculated from 15 autosomal STRs was constructed, and the genetic substructure in this area was presented. In conclusion, this 15 autosomal STR multiplex system provides highly informative STR data and appears useful in forensic casework and parentage testing in different populations.

Mesh:

Year:  2012        PMID: 22430197     DOI: 10.1007/s00414-012-0691-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  18 in total

1.  Cell line DNA typing in forensic genetics--the necessity of reliable standards.

Authors:  Reinhard Szibor; Jeanett Edelmann; Sandra Hering; Ines Plate; Holger Wittig; Lutz Roewer; Peter Wiegand; Francesco Calì; Valentino Romano; Matthias Michael
Journal:  Forensic Sci Int       Date:  2003-12-17       Impact factor: 2.395

2.  Fourteen non-CODIS autosomal short tandem repeat loci multiplex data from Taiwanese.

Authors:  Hsiao-Lin Hwa; Yih-Yuan Chang; James Chun-I Lee; Hsiang-Yi Yin; Li-Hui Tseng; Yi-Ning Su; Tsang-Ming Ko
Journal:  Int J Legal Med       Date:  2010-08-31       Impact factor: 2.686

3.  Characterization of new miniSTR loci to aid analysis of degraded DNA.

Authors:  Michael D Coble; John M Butler
Journal:  J Forensic Sci       Date:  2005-01       Impact factor: 1.832

4.  Performing the exact test of Hardy-Weinberg proportion for multiple alleles.

Authors:  S W Guo; E A Thompson
Journal:  Biometrics       Date:  1992-06       Impact factor: 2.571

5.  Estimation of average heterozygosity and genetic distance from a small number of individuals.

Authors:  M Nei
Journal:  Genetics       Date:  1978-07       Impact factor: 4.562

6.  Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups.

Authors:  A Edwards; H A Hammond; L Jin; C T Caskey; R Chakraborty
Journal:  Genomics       Date:  1992-02       Impact factor: 5.736

7.  Characterization of 26 miniSTR loci for improved analysis of degraded DNA samples.

Authors:  Carolyn R Hill; Margaret C Kline; Michael D Coble; John M Butler
Journal:  J Forensic Sci       Date:  2007-11-13       Impact factor: 1.832

8.  Standard calculations for evaluating a blood-group system.

Authors:  R A FISHER
Journal:  Heredity (Edinb)       Date:  1951-04       Impact factor: 3.821

9.  DNA recommendations. Further report of the DNA Commission of the ISFH regarding the use of short tandem repeat systems. International Society for Forensic Haemogenetics.

Authors:  W Bär; B Brinkmann; B Budowle; A Carracedo; P Gill; P Lincoln; W Mayr; B Olaisen
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

10.  Arlequin (version 3.0): an integrated software package for population genetics data analysis.

Authors:  Laurent Excoffier; Guillaume Laval; Stefan Schneider
Journal:  Evol Bioinform Online       Date:  2007-02-23       Impact factor: 1.625

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  2 in total

1.  Substitution mutation induced migration anomaly of a D10S2325 allele on capillary electrophoresis.

Authors:  Peng-Yu Chen; Ji Zhang; Hai-Bo Luo; Peter M Schneider; Yi-Ping Hou
Journal:  Int J Legal Med       Date:  2012-10-11       Impact factor: 2.686

2.  Massively parallel sequencing analysis of nondegraded and degraded DNA mixtures using the ForenSeq™ system in combination with EuroForMix software.

Authors:  Hsiao-Lin Hwa; Ming-Yih Wu; Wan-Chia Chung; Tsang-Ming Ko; Chih-Peng Lin; Hsiang-I Yin; Tsui-Ting Lee; James Chun-I Lee
Journal:  Int J Legal Med       Date:  2018-10-29       Impact factor: 2.686

  2 in total

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