Literature DB >> 22427496

Markerless gene deletion system for sphingomonads.

Andreas Kaczmarczyk1, Julia A Vorholt, Anne Francez-Charlot.   

Abstract

Here, we suggest that natural streptomycin resistance of many sphingomonads resides within rpsL. We constructed a dominant, streptomycin-sensitive rpsL allele and demonstrated its use as a counterselection marker in several sphingomonads. An rpsL-based markerless gene deletion system was developed and validated by deleting four genes in Sphingomonas sp. strain Fr1.

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Year:  2012        PMID： 22427496      PMCID： PMC3346355          DOI： 10.1128/AEM.07347-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  32 in total

1.  Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray.

Authors:  Josh D Neufeld; William W Mohn; Victor de Lorenzo
Journal:  Environ Microbiol       Date:  2006-01       Impact factor: 5.491

2.  Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain.

Authors:  William W Mohn; Birgit Mertens; Josh D Neufeld; Willy Verstraete; Victor de Lorenzo
Journal:  Environ Microbiol       Date:  2006-01       Impact factor: 5.491

Review 3.  Counterselectable markers: untapped tools for bacterial genetics and pathogenesis.

Authors:  J M Reyrat; V Pelicic; B Gicquel; R Rappuoli
Journal:  Infect Immun       Date:  1998-09       Impact factor: 3.441

4.  Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum.

Authors:  A Schäfer; A Tauch; W Jäger; J Kalinowski; G Thierbach; A Pühler
Journal:  Gene       Date:  1994-07-22       Impact factor: 3.688

5.  Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

Authors:  M Takeuchi; K Hamana; A Hiraishi
Journal:  Int J Syst Evol Microbiol       Date:  2001-07       Impact factor: 2.747

6.  Protection of Arabidopsis thaliana against leaf-pathogenic Pseudomonas syringae by Sphingomonas strains in a controlled model system.

Authors:  Gerd Innerebner; Claudia Knief; Julia A Vorholt
Journal:  Appl Environ Microbiol       Date:  2011-03-18       Impact factor: 4.792

Review 7.  Genetic basis of microbial carotenogenesis.

Authors:  C Sieiro; M Poza; T de Miguel; T G Villa
Journal:  Int Microbiol       Date:  2003-02-12       Impact factor: 2.479

8.  The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors.

Authors:  Shihui Yang; Dale A Pelletier; Tse-Yuan S Lu; Steven D Brown
Journal:  BMC Microbiol       Date:  2010-05-07       Impact factor: 3.605

9.  Isolation and characterization of Erythrobacter sp. strains from the upper ocean.

Authors:  Michal Koblízek; Oded Béjà; Robert R Bidigare; Stephanie Christensen; Bryan Benitez-Nelson; Costantino Vetriani; Marcin K Kolber; Paul G Falkowski; Zbigniew S Kolber
Journal:  Arch Microbiol       Date:  2003-09-23       Impact factor: 2.552

10.  pKSS--a second-generation general purpose cloning vector for efficient positive selection of recombinant clones.

Authors:  P Kast
Journal:  Gene       Date:  1994-01-28       Impact factor: 3.688
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  21 in total

1.  Cumate-inducible gene expression system for sphingomonads and other Alphaproteobacteria.

Authors:  Andreas Kaczmarczyk; Julia A Vorholt; Anne Francez-Charlot
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

2.  Two-tiered histidine kinase pathway involved in heat shock and salt sensing in the general stress response of Sphingomonas melonis Fr1.

Authors:  Andreas Kaczmarczyk; Ramon Hochstrasser; Julia A Vorholt; Anne Francez-Charlot
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

3.  Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.

Authors:  Jacob H Cecil; David C Garcia; Richard J Giannone; Joshua K Michener
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

4.  Versatile Vectors for Efficient Mutagenesis of Bradyrhizobium diazoefficiens and Other Alphaproteobacteria.

Authors:  Raphael Ledermann; Silvan Strebel; Clara Kampik; Hans-Martin Fischer
Journal:  Appl Environ Microbiol       Date:  2016-04-18       Impact factor: 4.792

5.  Complex two-component signaling regulates the general stress response in Alphaproteobacteria.

Authors:  Andreas Kaczmarczyk; Ramon Hochstrasser; Julia A Vorholt; Anne Francez-Charlot
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

6.  DdvK, a Novel Major Facilitator Superfamily Transporter Essential for 5,5'-Dehydrodivanillate Uptake by Sphingobium sp. Strain SYK-6.

Authors:  Kosuke Mori; Koh Niinuma; Masaya Fujita; Naofumi Kamimura; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2018-10-01       Impact factor: 4.792

7.  The Catabolic System of Acetovanillone and Acetosyringone in Sphingobium sp. Strain SYK-6 Useful for Upgrading Aromatic Compounds Obtained through Chemical Lignin Depolymerization.

Authors:  Yudai Higuchi; Naofumi Kamimura; Hiroki Takenami; Yusei Kikuiri; Chieko Yasuta; Kenta Tanatani; Toru Shobuda; Yuichiro Otsuka; Masaya Nakamura; Tomonori Sonoki; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2022-08-08       Impact factor: 5.005

8.  Bacterial Catabolism of β-Hydroxypropiovanillone and β-Hydroxypropiosyringone Produced in the Reductive Cleavage of Arylglycerol-β-Aryl Ether in Lignin.

Authors:  Yudai Higuchi; Shogo Aoki; Hiroki Takenami; Naofumi Kamimura; Kenji Takahashi; Shojiro Hishiyama; Christopher S Lancefield; O Stephen Ojo; Yoshihiro Katayama; Nicholas J Westwood; Eiji Masai
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

9.  An aldo-keto reductase is responsible for Fusarium toxin-degrading activity in a soil Sphingomonas strain.

Authors:  Wei-Jie He; Limin Zhang; Shu-Yuan Yi; Xue-Ling Tang; Qing-Song Yuan; Mao-Wei Guo; Ai-Bo Wu; Bo Qu; He-Ping Li; Yu-Cai Liao
Journal:  Sci Rep       Date:  2017-08-25       Impact factor: 4.379

10.  Synthetic vanillate-regulated promoter for graded gene expression in Sphingomonas.

Authors:  Andreas Kaczmarczyk; Julia A Vorholt; Anne Francez-Charlot
Journal:  Sci Rep       Date:  2014-09-29       Impact factor: 4.379
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