Literature DB >> 22425659

Engineering genes for predictable protein expression.

Claes Gustafsson1, Jeremy Minshull, Sridhar Govindarajan, Jon Ness, Alan Villalobos, Mark Welch.   

Abstract

The DNA sequence used to encode a polypeptide can have dramatic effects on its expression. Lack of readily available tools has until recently inhibited meaningful experimental investigation of this phenomenon. Advances in synthetic biology and the application of modern engineering approaches now provide the tools for systematic analysis of the sequence variables affecting heterologous expression of recombinant proteins. We here discuss how these new tools are being applied and how they circumvent the constraints of previous approaches, highlighting some of the surprising and promising results emerging from the developing field of gene engineering.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22425659      PMCID: PMC3746766          DOI: 10.1016/j.pep.2012.02.013

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  77 in total

1.  Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli.

Authors:  Parayil Kumaran Ajikumar; Wen-Hai Xiao; Keith E J Tyo; Yong Wang; Fritz Simeon; Effendi Leonard; Oliver Mucha; Too Heng Phon; Blaine Pfeifer; Gregory Stephanopoulos
Journal:  Science       Date:  2010-10-01       Impact factor: 47.728

2.  A role for codon order in translation dynamics.

Authors:  Gina Cannarozzi; Gina Cannarrozzi; Nicol N Schraudolph; Mahamadou Faty; Peter von Rohr; Markus T Friberg; Alexander C Roth; Pedro Gonnet; Gaston Gonnet; Yves Barral
Journal:  Cell       Date:  2010-04-16       Impact factor: 41.582

Review 3.  Tagging recombinant proteins to enhance solubility and aid purification.

Authors:  Dermot Walls; Sinéad T Loughran
Journal:  Methods Mol Biol       Date:  2011

4.  Multifactorial determinants of protein expression in prokaryotic open reading frames.

Authors:  Malin Allert; J Colin Cox; Homme W Hellinga
Journal:  J Mol Biol       Date:  2010-08-18       Impact factor: 5.469

5.  Slowing bacterial translation speed enhances eukaryotic protein folding efficiency.

Authors:  Efraín Siller; Diane C DeZwaan; John F Anderson; Brian C Freeman; José M Barral
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

6.  Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors:  Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal:  Science       Date:  2010-05-20       Impact factor: 47.728

Review 7.  Beyond directed evolution--semi-rational protein engineering and design.

Authors:  Stefan Lutz
Journal:  Curr Opin Biotechnol       Date:  2010-09-24       Impact factor: 9.740

Review 8.  Synonymous but not the same: the causes and consequences of codon bias.

Authors:  Joshua B Plotkin; Grzegorz Kudla
Journal:  Nat Rev Genet       Date:  2010-11-23       Impact factor: 53.242

9.  Increased levels of recombinant human proteins with the Escherichia coli strain Rosetta(DE3).

Authors:  Hanna Tegel; Samuel Tourle; Jenny Ottosson; Anja Persson
Journal:  Protein Expr Purif       Date:  2009-09-04       Impact factor: 1.650

10.  Design parameters to control synthetic gene expression in Escherichia coli.

Authors:  Mark Welch; Sridhar Govindarajan; Jon E Ness; Alan Villalobos; Austin Gurney; Jeremy Minshull; Claes Gustafsson
Journal:  PLoS One       Date:  2009-09-14       Impact factor: 3.240

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  36 in total

Review 1.  DNA assembly techniques for next-generation combinatorial biosynthesis of natural products.

Authors:  Ryan E Cobb; Jonathan C Ning; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2013-10-15       Impact factor: 3.346

Review 2.  A critical analysis of codon optimization in human therapeutics.

Authors:  Vincent P Mauro; Stephen A Chappell
Journal:  Trends Mol Med       Date:  2014-09-25       Impact factor: 11.951

3.  Cloning and Expression Analysis of Human Amelogenin in Nicotiana benthamiana Plants by Means of a Transient Expression System.

Authors:  Mattia Pegoraro; Slavica Matić; Barbara Pergolizzi; Luca Iannarelli; Andrea M Rossi; Marco Morra; Emanuela Noris
Journal:  Mol Biotechnol       Date:  2017-10       Impact factor: 2.695

Review 4.  mRNA-based therapeutics--developing a new class of drugs.

Authors:  Ugur Sahin; Katalin Karikó; Özlem Türeci
Journal:  Nat Rev Drug Discov       Date:  2014-09-19       Impact factor: 84.694

Review 5.  Codon Bias as a Means to Fine-Tune Gene Expression.

Authors:  Tessa E F Quax; Nico J Claassens; Dieter Söll; John van der Oost
Journal:  Mol Cell       Date:  2015-07-16       Impact factor: 17.970

6.  Stable In Vivo Transgene Expression in Endothelial Cells with Helper-Dependent Adenovirus: Roles of Promoter and Interleukin-10.

Authors:  Nagadhara Dronadula; Bradley K Wacker; Reginald Van Der Kwast; Jingwan Zhang; David A Dichek
Journal:  Hum Gene Ther       Date:  2016-11-14       Impact factor: 5.695

7.  The Key Parameters that Govern Translation Efficiency.

Authors:  Dan D Erdmann-Pham; Khanh Dao Duc; Yun S Song
Journal:  Cell Syst       Date:  2020-01-15       Impact factor: 10.304

8.  PEGylation-aided refolding of globular adiponectin.

Authors:  Mingming Gao; Yue Tong; Xiangdong Gao; Wenbing Yao
Journal:  World J Microbiol Biotechnol       Date:  2013-03-20       Impact factor: 3.312

9.  Vaccine development against the Taenia solium parasite: the role of recombinant protein expression in Escherichia coli.

Authors:  Charles Gauci; César Jayashi; Marshall W Lightowlers
Journal:  Bioengineered       Date:  2012-11-29       Impact factor: 3.269

10.  A simplified counter-selection recombineering protocol for creating fluorescent protein reporter constructs directly from C. elegans fosmid genomic clones.

Authors:  Nisha Hirani; Marcel Westenberg; Minaxi S Gami; Paul Davis; Ian A Hope; Colin T Dolphin
Journal:  BMC Biotechnol       Date:  2013-01-03       Impact factor: 2.563

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