Literature DB >> 22415272

Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae.

Somnuk Bunsupa1, Kae Katayama, Emi Ikeura, Akira Oikawa, Kiminori Toyooka, Kazuki Saito, Mami Yamazaki.   

Abstract

Lysine decarboxylase (LDC) catalyzes the first-step in the biosynthetic pathway of quinolizidine alkaloids (QAs), which form a distinct, large family of plant alkaloids. A cDNA of lysine/ornithine decarboxylase (L/ODC) was isolated by differential transcript screening in QA-producing and nonproducing cultivars of Lupinus angustifolius. We also obtained L/ODC cDNAs from four other QA-producing plants, Sophora flavescens, Echinosophora koreensis, Thermopsis chinensis, and Baptisia australis. These L/ODCs form a phylogenetically distinct subclade in the family of plant ornithine decarboxylases. Recombinant L/ODCs from QA-producing plants preferentially or equally catalyzed the decarboxylation of L-lysine and L-ornithine. L. angustifolius L/ODC (La-L/ODC) was found to be localized in chloroplasts, as suggested by the transient expression of a fusion protein of La-L/ODC fused to the N terminus of green fluorescent protein in Arabidopsis thaliana. Transgenic tobacco (Nicotiana tabacum) suspension cells and hairy roots produced enhanced levels of cadaverine-derived alkaloids, and transgenic Arabidopsis plants expressing (La-L/ODC) produced enhanced levels of cadaverine, indicating the involvement of this enzyme in lysine decarboxylation to form cadaverine. Site-directed mutagenesis and protein modeling studies revealed a structural basis for preferential LDC activity, suggesting an evolutionary implication of L/ODC in the QA-producing plants.

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Year:  2012        PMID: 22415272      PMCID: PMC3336119          DOI: 10.1105/tpc.112.095885

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  60 in total

Review 1.  Plant cell factories in the post-genomic era: new ways to produce designer secondary metabolites.

Authors:  Kirsi-Marja Oksman-Caldentey; Dirk Inzé
Journal:  Trends Plant Sci       Date:  2004-09       Impact factor: 18.313

2.  The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Authors:  Konstantin Arnold; Lorenza Bordoli; Jürgen Kopp; Torsten Schwede
Journal:  Bioinformatics       Date:  2005-11-13       Impact factor: 6.937

3.  A structural insight into the inhibition of human and Leishmania donovani ornithine decarboxylases by 1-amino-oxy-3-aminopropane.

Authors:  Veronica T Dufe; Daniel Ingner; Olle Heby; Alex R Khomutov; Lo Persson; Salam Al-Karadaghi
Journal:  Biochem J       Date:  2007-07-15       Impact factor: 3.857

4.  Four genes in two diverged subfamilies encode the ribulose-1,5-bisphosphate carboxylase small subunit polypeptides of Arabidopsis thaliana.

Authors:  E Krebbers; J Seurinck; L Herdies; A R Cashmore; M P Timko
Journal:  Plant Mol Biol       Date:  1988-11       Impact factor: 4.076

5.  Lysine decarboxylase (Escherichia coli B).

Authors:  E A Boeker; E H Fischer
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

6.  Identification of essential active-site residues in ornithine decarboxylase of Nicotiana glutinosa decarboxylating both L-ornithine and L-lysine.

Authors:  Y S Lee; Y D Cho
Journal:  Biochem J       Date:  2001-12-15       Impact factor: 3.857

7.  Ornithine decarboxylase and arginine decarboxylase gene transcripts are co-localized in developing tissues of Glycine max etiolated seedlings.

Authors:  Costas Delis; Maria Dimou; Rodica Catalina Efrose; Emmanouil Flemetakis; Georgios Aivalakis; Panagiotis Katinakis
Journal:  Plant Physiol Biochem       Date:  2005-01-21       Impact factor: 4.270

8.  The gene and the primary structure of ornithine decarboxylase from Saccharomyces cerevisiae.

Authors:  W A Fonzi; P S Sypherd
Journal:  J Biol Chem       Date:  1987-07-25       Impact factor: 5.157

9.  Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.

Authors:  Tsuyoshi Nakagawa; Takayuki Kurose; Takeshi Hino; Katsunori Tanaka; Makoto Kawamukai; Yasuo Niwa; Kiminori Toyooka; Ken Matsuoka; Tetsuro Jinbo; Tetsuya Kimura
Journal:  J Biosci Bioeng       Date:  2007-07       Impact factor: 2.894

10.  Purification and characterization of monomeric lysine decarboxylase from soybean (Glycine max) axes.

Authors:  H S Kim; B H Kim; Y D Cho
Journal:  Arch Biochem Biophys       Date:  1998-06-01       Impact factor: 4.013

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  35 in total

1.  Cadaverine: a lysine catabolite involved in plant growth and development.

Authors:  Pushpa C Tomar; Nita Lakra; S N Mishra
Journal:  Plant Signal Behav       Date:  2013-10

2.  Spermine modulates the expression of two probable polyamine transporter genes and determines growth responses to cadaverine in Arabidopsis.

Authors:  G H M Sagor; Thomas Berberich; Seiji Kojima; Masaru Niitsu; Tomonobu Kusano
Journal:  Plant Cell Rep       Date:  2016-02-23       Impact factor: 4.570

3.  Arabidopsis mutant plants with diverse defects in polyamine metabolism show unequal sensitivity to exogenous cadaverine probably based on their spermine content.

Authors:  Taibo Liu; Hayato Dobashi; Dong Wook Kim; G H M Sagor; Masaru Niitsu; Thomas Berberich; Tomonobu Kusano
Journal:  Physiol Mol Biol Plants       Date:  2014-03-25

4.  Development and Validation of a Gene-Targeted dCAPS Marker for Marker-Assisted Selection of Low-Alkaloid Content in Seeds of Narrow-Leafed Lupin (Lupinus angustifolius L.).

Authors:  Magdalena Kroc; Katarzyna Czepiel; Paulina Wilczura; Monika Mokrzycka; Wojciech Święcicki
Journal:  Genes (Basel)       Date:  2019-06-04       Impact factor: 4.096

5.  Molecular Evolution and Functional Characterization of a Bifunctional Decarboxylase Involved in Lycopodium Alkaloid Biosynthesis.

Authors:  Somnuk Bunsupa; Kousuke Hanada; Akira Maruyama; Kaori Aoyagi; Kana Komatsu; Hideki Ueno; Madoka Yamashita; Ryosuke Sasaki; Akira Oikawa; Kazuki Saito; Mami Yamazaki
Journal:  Plant Physiol       Date:  2016-06-14       Impact factor: 8.340

Review 6.  Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism.

Authors:  Craig A Schenck; Lucas Busta
Journal:  Plant Mol Biol       Date:  2021-11-23       Impact factor: 4.076

Review 7.  Polyamines in Eukaryotes, Bacteria, and Archaea.

Authors:  Anthony J Michael
Journal:  J Biol Chem       Date:  2016-06-07       Impact factor: 5.157

8.  Expression, crystallization and preliminary X-ray analysis of McbB, a multifunctional enzyme involved in β-carboline skeleton biosynthesis.

Authors:  Hua Wang; Huaidong Zhang; Yanling Mi; Jianhua Ju; Qi Chen; Houjin Zhang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-25       Impact factor: 1.056

9.  A metabolic regulon reveals early and late acting enzymes in neuroactive Lycopodium alkaloid biosynthesis.

Authors:  Ryan S Nett; Yaereen Dho; Yun-Yee Low; Elizabeth S Sattely
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-15       Impact factor: 11.205

Review 10.  Rethinking of the Roles of Endophyte Symbiosis and Mycotoxin in Oxytropis Plants.

Authors:  Huirui Guan; Xin Liu; Luis A J Mur; Yanping Fu; Yahui Wei; Jing Wang; Wei He
Journal:  J Fungi (Basel)       Date:  2021-05-20
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